Variant report

Variant	rs72976306
Chromosome Location	chr11:101438258-101438259
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11224863	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11224876	0.91[AMR][1000 genomes]
rs11224879	0.91[AMR][1000 genomes]
rs11224894	0.91[AMR][1000 genomes]
rs11224898	0.83[AMR][1000 genomes]
rs11224952	0.88[AMR][1000 genomes]
rs11493972	0.91[AMR][1000 genomes]
rs12146595	0.84[AMR][1000 genomes]
rs12361061	0.91[AMR][1000 genomes]
rs12789602	0.88[AMR][1000 genomes]
rs12790768	0.81[AMR][1000 genomes]
rs12797777	0.83[AMR][1000 genomes]
rs34159741	0.83[AMR][1000 genomes]
rs35456437	0.87[AMR][1000 genomes]
rs3802829	0.88[AMR][1000 genomes]
rs3824935	0.88[AMR][1000 genomes]
rs3922961	0.88[AMR][1000 genomes]
rs7103450	0.84[AMR][1000 genomes]
rs7109847	0.81[AMR][1000 genomes]
rs7121108	0.81[AMR][1000 genomes]
rs7126833	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv530644	chr11:101010088-101486038	Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv898330	chr11:101243644-101722031	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761703	chr11:101406049-101439667	Enhancers Flanking Active TSS Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv2754308	chr11:101409790-101502790	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv898331	chr11:101436689-101492630	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:101426400-101447600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:101437000-101444400	Weak transcription	NHDF-Ad	bronchial
3	chr11:101437400-101438400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:101437400-101438400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr11:101437400-101438400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:101437400-101438400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:101437400-101438600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:101437800-101438400	Enhancers	Fetal Stomach	stomach
9	chr11:101438000-101438400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr11:101438000-101438400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr11:101438000-101438400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr11:101438000-101438400	Enhancers	Fetal Muscle Trunk	muscle
13	chr11:101438000-101438400	Enhancers	HepG2	liver
14	chr11:101438000-101438400	Enhancers	NHLF	lung
15	chr11:101438000-101438600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr11:101438200-101438400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr11:101438200-101438400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:101438200-101438400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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