Variant report

Variant	rs72980039
Chromosome Location	chr3:133089608-133089609
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73209837	0.83[AFR][1000 genomes]
rs7614292	1.00[ASN][1000 genomes]
rs7636745	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877503	chr3:133035774-133104631	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133080800-133098600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:133081800-133090000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:133083200-133099200	Weak transcription	Lung	lung
4	chr3:133085800-133091600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:133086200-133090200	Enhancers	Fetal Brain Female	brain
6	chr3:133086200-133090800	Enhancers	Brain Cingulate Gyrus	brain
7	chr3:133086400-133090400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:133086800-133089800	Enhancers	Brain Germinal Matrix	brain
9	chr3:133088000-133091000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:133088000-133093800	Weak transcription	HSMMtube	muscle
11	chr3:133088600-133089800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr3:133088600-133090400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:133088800-133090000	Enhancers	Brain Angular Gyrus	brain
14	chr3:133089200-133090000	Enhancers	Fetal Brain Male	brain
15	chr3:133089200-133090200	Enhancers	Brain Hippocampus Middle	brain
16	chr3:133089200-133094800	Weak transcription	Fetal Lung	lung
17	chr3:133089600-133093800	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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