Variant report

Variant	rs72980845
Chromosome Location	chr2:127735478-127735479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:127734864..127736973-chr2:127738271..127740388,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10803617	0.88[ASN][1000 genomes]
rs10803618	0.82[ASN][1000 genomes]
rs12053575	0.82[ASN][1000 genomes]
rs12620265	0.94[ASN][1000 genomes]
rs1912498	0.88[ASN][1000 genomes]
rs4662695	0.82[ASN][1000 genomes]
rs4662696	0.82[ASN][1000 genomes]
rs4662698	0.94[ASN][1000 genomes]
rs4662699	0.94[ASN][1000 genomes]
rs4663070	0.82[ASN][1000 genomes]
rs4663075	0.82[ASN][1000 genomes]
rs4663076	0.82[ASN][1000 genomes]
rs4663077	0.82[ASN][1000 genomes]
rs4663079	0.82[ASN][1000 genomes]
rs4663080	0.82[ASN][1000 genomes]
rs4663081	0.82[ASN][1000 genomes]
rs4663082	0.82[ASN][1000 genomes]
rs4663083	0.82[ASN][1000 genomes]
rs55962144	0.86[ASN][1000 genomes]
rs61633215	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6431201	0.82[ASN][1000 genomes]
rs6431206	0.88[ASN][1000 genomes]
rs6431207	0.88[ASN][1000 genomes]
rs6431208	0.88[ASN][1000 genomes]
rs6431209	0.82[ASN][1000 genomes]
rs6431210	0.82[ASN][1000 genomes]
rs6431211	0.88[ASN][1000 genomes]
rs6431212	0.88[ASN][1000 genomes]
rs6749935	0.82[ASN][1000 genomes]
rs6753685	0.82[ASN][1000 genomes]
rs72980853	0.87[AMR][1000 genomes]
rs72980858	1.00[EUR][1000 genomes]
rs73952788	0.92[ASN][1000 genomes]
rs73952789	0.94[ASN][1000 genomes]
rs7419804	0.82[ASN][1000 genomes]
rs7420039	0.84[ASN][1000 genomes]
rs7423317	0.82[ASN][1000 genomes]
rs7424763	0.88[ASN][1000 genomes]
rs7556956	0.82[ASN][1000 genomes]
rs7557069	0.82[ASN][1000 genomes]
rs7565248	0.84[ASN][1000 genomes]
rs9967839	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999422	chr2:127464647-127956543	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1004930	chr2:127477369-127938234	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv834365	chr2:127616996-127793863	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834366	chr2:127633714-127784692	Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv583031	chr2:127732462-127758448	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127730200-127735600	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:127733600-127735800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:127733600-127737000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:127733800-127739000	Weak transcription	Fetal Lung	lung
5	chr2:127734200-127735600	Weak transcription	Brain Anterior Caudate	brain
6	chr2:127734400-127735600	Weak transcription	HepG2	liver
7	chr2:127734400-127739000	Weak transcription	Fetal Muscle Leg	muscle
8	chr2:127734600-127736400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr2:127735000-127736200	Weak transcription	Brain Substantia Nigra	brain

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