Variant report

Variant	rs72981071
Chromosome Location	chr11:105566973-105566974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72985188	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72985202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72988144	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72988175	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053687	chr11:105513034-105595722	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105561400-105568400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:105561400-105586200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:105564800-105569400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:105564800-105569600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:105566000-105567000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr11:105566600-105569600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:105566800-105567000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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