Variant report

Variant	rs72982241
Chromosome Location	chr6:134262207-134262208
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134260670..134263291-chr6:134281523..134283508,2	K562	blood:
2	chr6:134259055..134262632-chr6:134266342..134269518,3	K562	blood:
3	chr6:134258075..134267958-chr6:134268539..134275229,14	MCF-7	breast:
4	chr6:134259913..134266602-chr6:134271724..134276541,9	K562	blood:
5	chr6:134260020..134263131-chr6:134418737..134422335,3	K562	blood:
6	chr6:134260984..134262645-chr6:134269778..134271680,2	K562	blood:
7	chr6:134259723..134262365-chr6:134277742..134281079,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs6910014	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72982237	1.00[EUR][1000 genomes]
rs72982240	0.92[EUR][1000 genomes]
rs72982249	1.00[EUR][1000 genomes]
rs72982252	1.00[EUR][1000 genomes]
rs72982261	0.92[EUR][1000 genomes]
rs72982263	1.00[EUR][1000 genomes]
rs72982268	1.00[EUR][1000 genomes]
rs72982270	1.00[EUR][1000 genomes]
rs72982272	1.00[EUR][1000 genomes]
rs72982279	1.00[EUR][1000 genomes]
rs72982291	0.92[EUR][1000 genomes]
rs72982292	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv604701	chr6:134248060-134269657	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134261400-134262400	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links