Variant report

Variant	rs72983866
Chromosome Location	chr3:140870100-140870101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140868793..140870941-chr3:140893015..140895317,2	MCF-7	breast:
2	chr3:140832996..140835828-chr3:140869146..140871657,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58970344	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140861000-140880000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:140863000-140870600	Weak transcription	Fetal Lung	lung
3	chr3:140863800-140871000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:140863800-140872200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:140864600-140870600	Weak transcription	Right Atrium	heart
6	chr3:140864600-140873200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:140865800-140870200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:140866800-140876600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:140867000-140871400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:140867000-140871400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr3:140867200-140872000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:140867200-140872000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:140867200-140872200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:140867400-140873000	Enhancers	Fetal Heart	heart
15	chr3:140868600-140872200	Enhancers	Fetal Muscle Trunk	muscle
16	chr3:140869000-140871600	Weak transcription	Pancreas	Pancrea
17	chr3:140869000-140872200	Enhancers	Right Ventricle	heart
18	chr3:140869400-140870400	Enhancers	Fetal Muscle Leg	muscle
19	chr3:140869400-140870800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:140869600-140870600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:140869600-140870600	Weak transcription	Left Ventricle	heart
22	chr3:140869600-140870800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:140869600-140870800	Enhancers	HSMM	muscle
24	chr3:140869600-140870800	Enhancers	HSMMtube	muscle
25	chr3:140869600-140873400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr3:140869800-140870600	Enhancers	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links