Variant report

Variant	rs72985254
Chromosome Location	chr3:136536299-136536300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
SLC35G2	TF binding region
ENSG00000118007	Chromatin interaction
ENSG00000261758	Chromatin interaction
ENSG00000158092	Chromatin interaction
ENSG00000239213	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11916248	1.00[AFR][1000 genomes]
rs16844164	0.84[AFR][1000 genomes]
rs59752479	1.00[AFR][1000 genomes]
rs6809885	0.89[AFR][1000 genomes]
rs72975375	1.00[AFR][1000 genomes]
rs72981338	1.00[AFR][1000 genomes]
rs72989129	1.00[AFR][1000 genomes]
rs7637345	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877530	chr3:136514310-136604697	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	n/a
2	nsv877531	chr3:136517016-136662954	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv877532	chr3:136526939-136662603	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136535400-136536800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:136535400-136537200	Enhancers	Fetal Lung	lung
3	chr3:136535600-136537200	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:136535800-136536800	Enhancers	HepG2	liver
5	chr3:136535800-136537000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:136535800-136537200	Enhancers	Brain Anterior Caudate	brain
7	chr3:136535800-136537200	Enhancers	Brain Germinal Matrix	brain
8	chr3:136536000-136536400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:136536000-136536400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:136536000-136537000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:136536000-136537000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:136536000-136537200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:136536000-136537200	Enhancers	A549	lung
14	chr3:136536000-136537400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:136536200-136536600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:136536200-136537000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:136536200-136537200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:136536200-136537200	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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