Variant report
| Variant | rs72985967 |
|---|---|
| Chromosome Location | chr11:74222312-74222313 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:74221765..74224037-chr11:74231318..74233786,2 | MCF-7 | breast: | |
| 2 | chr11:74204227..74206319-chr11:74221670..74225109,4 | MCF-7 | breast: | |
| 3 | chr11:74202077..74207497-chr11:74219080..74223707,5 | MCF-7 | breast: | |
| 4 | chr11:74221433..74223217-chr11:74224935..74227895,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000077514 | Chromatin interaction |
| ENSG00000175536 | Chromatin interaction |
| ENSG00000254837 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11236119 | 0.81[EUR][1000 genomes] |
| rs11236123 | 0.83[EUR][1000 genomes] |
| rs11236128 | 0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11236129 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11236130 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11236133 | 0.91[EUR][1000 genomes] |
| rs11236134 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11236142 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11512892 | 1.00[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11518799 | 0.94[EUR][1000 genomes] |
| rs12276521 | 0.80[EUR][1000 genomes] |
| rs12276578 | 0.80[EUR][1000 genomes] |
| rs2367682 | 0.94[EUR][1000 genomes] |
| rs72985951 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72985953 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72985958 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72990080 | 1.00[AFR][1000 genomes];0.89[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757451 | chr11:73842609-74545888 | Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 87 gene(s) | inside rSNPs | diseases |
| 2 | esv2759837 | chr11:73842609-74557597 | Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 88 gene(s) | inside rSNPs | diseases |
| 3 | esv34979 | chr11:73878688-74533452 | Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 85 gene(s) | inside rSNPs | diseases |
| 4 | esv2758277 | chr11:73887567-74557597 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 85 gene(s) | inside rSNPs | diseases |
| 5 | nsv825994 | chr11:73936667-74534455 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 83 gene(s) | inside rSNPs | diseases |
| 6 | nsv832209 | chr11:74155883-74329119 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:74218400-74222400 | Weak transcription | Gastric | stomach |
| 2 | chr11:74218600-74222400 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 3 | chr11:74220400-74222800 | Weak transcription | Right Ventricle | heart |
