Variant report

Variant	rs72986358
Chromosome Location	chr3:141621836-141621837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141594674..141598943-chr3:141621711..141625603,5	MCF-7	breast:
2	chr3:141594460..141597483-chr3:141621419..141624479,3	K562	blood:
3	chr3:141593925..141596999-chr3:141621116..141624479,3	K562	blood:

Variant related genes	Relation type
ENSG00000069849	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56979203	1.00[AMR][1000 genomes]
rs58449157	1.00[AMR][1000 genomes]
rs60939446	1.00[AMR][1000 genomes]
rs61327618	1.00[AMR][1000 genomes]
rs72986303	1.00[AMR][1000 genomes]
rs72986323	1.00[AMR][1000 genomes]
rs72986333	1.00[AMR][1000 genomes]
rs72988221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141596400-141626400	Weak transcription	Pancreas	Pancrea
2	chr3:141597000-141625200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr3:141597000-141646400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:141597200-141625800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:141597800-141627000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:141598000-141625400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr3:141598000-141626000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:141598000-141627000	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:141598000-141627200	Weak transcription	Colonic Mucosa	Colon
10	chr3:141598000-141642000	Weak transcription	Right Ventricle	heart
11	chr3:141598200-141626000	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:141598200-141627200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:141598200-141640200	Weak transcription	Fetal Brain Male	brain
14	chr3:141598200-141640200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:141598400-141622200	Weak transcription	Left Ventricle	heart
16	chr3:141598400-141623800	Weak transcription	NH-A	brain
17	chr3:141605200-141627200	Weak transcription	Primary T cells from cord blood	blood
18	chr3:141606200-141623600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:141606800-141625200	Weak transcription	HSMMtube	muscle
20	chr3:141607200-141623800	Weak transcription	HUVEC	blood vessel
21	chr3:141614000-141626000	Weak transcription	Fetal Lung	lung
22	chr3:141614200-141624000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:141614800-141625200	Weak transcription	NHDF-Ad	bronchial
24	chr3:141615000-141622200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr3:141616200-141623600	Weak transcription	Aorta	Aorta
26	chr3:141616200-141623800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:141616200-141625800	Weak transcription	NHLF	lung
28	chr3:141616200-141627000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr3:141616200-141646600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr3:141616200-141648600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr3:141616400-141622800	Weak transcription	HepG2	liver
32	chr3:141616400-141623800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr3:141616400-141626000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr3:141616800-141627200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:141617800-141622400	Weak transcription	Hela-S3	cervix
36	chr3:141618000-141633600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
37	chr3:141618400-141622400	Weak transcription	K562	blood
38	chr3:141618400-141623800	Weak transcription	HSMM	muscle
39	chr3:141619200-141622400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr3:141619200-141622400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:141619200-141625800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr3:141619400-141622000	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr3:141619400-141622200	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr3:141619400-141624000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr3:141619400-141624200	Weak transcription	HMEC	breast
46	chr3:141619400-141625200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:141619400-141625200	Weak transcription	Adipose Nuclei	Adipose
48	chr3:141619400-141625400	Weak transcription	Primary B cells from cord blood	blood
49	chr3:141619400-141625400	Weak transcription	Fetal Brain Female	brain
50	chr3:141619400-141626400	Weak transcription	Fetal Muscle Leg	muscle

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