Variant report

Variant	rs72986700
Chromosome Location	chr11:74538693-74538694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72988507	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
5	nsv897916	chr11:74465068-74574677	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74502800-74545600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:74528000-74576400	Weak transcription	Stomach Mucosa	stomach
3	chr11:74531600-74542400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:74531800-74540800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:74532600-74541000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:74533000-74539000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
7	chr11:74533000-74540800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
8	chr11:74533000-74543000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:74533200-74539800	ZNF genes & repeats	Dnd41	blood
10	chr11:74533400-74538800	ZNF genes & repeats	GM12878-XiMat	blood
11	chr11:74533400-74545800	Weak transcription	Left Ventricle	heart
12	chr11:74533600-74546200	Weak transcription	Aorta	Aorta
13	chr11:74533600-74546200	Weak transcription	Psoas Muscle	Psoas
14	chr11:74533600-74546400	Weak transcription	Right Ventricle	heart
15	chr11:74533800-74545200	Weak transcription	Osteobl	bone
16	chr11:74533800-74553200	Weak transcription	Fetal Heart	heart
17	chr11:74534000-74538800	ZNF genes & repeats	Primary B cells from cord blood	blood
18	chr11:74534400-74538800	ZNF genes & repeats	Fetal Muscle Leg	muscle
19	chr11:74534400-74540000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:74534600-74538800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr11:74534600-74544800	Weak transcription	Colon Smooth Muscle	Colon
22	chr11:74534800-74538800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
23	chr11:74535400-74539000	ZNF genes & repeats	Fetal Brain Female	brain
24	chr11:74535600-74539200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
25	chr11:74535800-74544200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:74536000-74546400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:74536200-74541200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:74536400-74538800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:74536400-74538800	ZNF genes & repeats	Fetal Intestine Small	intestine
30	chr11:74536600-74539200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:74536800-74538800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
32	chr11:74536800-74538800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:74536800-74541000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:74537000-74538800	Strong transcription	Muscle Satellite Cultured Cells	--
35	chr11:74537200-74539200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
36	chr11:74537200-74539400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
37	chr11:74537400-74538800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
38	chr11:74537400-74539200	ZNF genes & repeats	Primary T cells from cord blood	blood
39	chr11:74537800-74539400	ZNF genes & repeats	Fetal Lung	lung
40	chr11:74537800-74539800	ZNF genes & repeats	Fetal Kidney	kidney
41	chr11:74538200-74539200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:74538200-74545800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr11:74538200-74545800	Weak transcription	Brain Angular Gyrus	brain
44	chr11:74538200-74546400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:74538400-74539200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:74538400-74539400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr11:74538400-74539800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr11:74538400-74541800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr11:74538400-74544000	Weak transcription	Adipose Nuclei	Adipose
50	chr11:74538400-74544200	Weak transcription	Rectal Mucosa Donor 29	rectum

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