Variant report

Variant	rs72986800
Chromosome Location	chr4:171350057-171350058
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56009675	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58180023	1.00[AMR][1000 genomes]
rs60867686	1.00[AMR][1000 genomes]
rs72986783	1.00[AMR][1000 genomes]
rs72988722	1.00[AMR][1000 genomes]
rs72988726	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432673	chr4:171340897-171423121	Active TSS Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171347800-171350800	Enhancers	Brain Germinal Matrix	brain
2	chr4:171349400-171350600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr4:171349600-171350200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:171349600-171350400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:171349600-171350600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:171349800-171350400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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