Variant report

Variant	rs72987603
Chromosome Location	chr2:134025425-134025426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16822420	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16823104	0.91[AFR][1000 genomes]
rs16823134	0.86[AFR][1000 genomes]
rs58102366	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58265762	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59127222	1.00[EUR][1000 genomes]
rs59599317	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60574357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61471957	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6710084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6726075	1.00[EUR][1000 genomes]
rs6728875	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72985648	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72985663	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72985665	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72985667	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72985668	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72985673	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72985674	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72985682	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72985688	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72985689	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72985690	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72987609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72987610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72987616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72987622	0.84[AFR][1000 genomes]
rs72987629	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997821	chr2:133868822-134360220	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv535927	chr2:133868822-134360220	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1002488	chr2:133890159-134275312	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv535928	chr2:133890159-134275312	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1011100	chr2:133900062-134046163	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	esv3375790	chr2:133906915-134222833	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1005405	chr2:133930876-134055434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv535929	chr2:133930876-134055434	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv516915	chr2:133999831-134054662	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv834384	chr2:134005229-134188648	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	esv3367779	chr2:134023582-134025680	Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134023800-134026400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:134024400-134025600	Enhancers	Brain Substantia Nigra	brain
3	chr2:134025200-134025600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:134025200-134025800	Enhancers	NHDF-Ad	bronchial
5	chr2:134025200-134026000	Enhancers	Hela-S3	cervix
6	chr2:134025200-134035400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:134025400-134025600	Enhancers	Fetal Kidney	kidney
8	chr2:134025400-134025800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:134025400-134025800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr2:134025400-134026000	Enhancers	A549	lung

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