Variant report

Variant	rs72988510
Chromosome Location	chr11:74587681-74587682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPCS2-3	chr11:74587633-74588022	NONHSAT022962
2	lnc-SPCS2-3	chr11:74587676-74588022	NONHSAT022963

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12805108	1.00[AFR][1000 genomes]
rs55755208	1.00[AFR][1000 genomes]
rs55772834	1.00[AFR][1000 genomes]
rs72988507	1.00[AFR][1000 genomes]
rs72989331	1.00[AFR][1000 genomes]
rs72991248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72992691	1.00[AFR][1000 genomes]
rs72992693	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932190	chr11:74359867-74618935	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
2	nsv897917	chr11:74474266-74595507	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832210	chr11:74562782-74732133	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74562200-74595800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:74569800-74588400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:74570000-74588400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:74570600-74588400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr11:74571000-74588400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr11:74573600-74588400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:74574200-74588400	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr11:74575600-74588400	ZNF genes & repeats	Liver	Liver
9	chr11:74579400-74587800	ZNF genes & repeats	Fetal Brain Female	brain
10	chr11:74579400-74588000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:74580600-74588000	ZNF genes & repeats	Left Ventricle	heart
12	chr11:74580600-74588200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:74580800-74587800	ZNF genes & repeats	Aorta	Aorta
14	chr11:74581000-74588000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr11:74581000-74588400	ZNF genes & repeats	Fetal Lung	lung
16	chr11:74582800-74587800	Weak transcription	K562	blood
17	chr11:74582800-74588200	Weak transcription	NH-A	brain
18	chr11:74583000-74588400	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr11:74583200-74587800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr11:74583200-74587800	Weak transcription	HMEC	breast
21	chr11:74583200-74594600	Weak transcription	Hela-S3	cervix
22	chr11:74583200-74595200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr11:74583400-74588400	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr11:74583600-74588000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr11:74583600-74588200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:74583600-74588400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:74583800-74588200	Strong transcription	Brain Angular Gyrus	brain
28	chr11:74583800-74588200	Strong transcription	Brain Anterior Caudate	brain
29	chr11:74583800-74588200	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:74583800-74595200	Weak transcription	Fetal Thymus	thymus
31	chr11:74583800-74598600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:74584000-74587800	Weak transcription	HepG2	liver
33	chr11:74584000-74588000	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr11:74584000-74588400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:74584000-74594400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:74584000-74594600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr11:74584000-74594600	Weak transcription	Pancreas	Pancrea
38	chr11:74584400-74587800	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr11:74584400-74588000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:74584400-74588400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:74584400-74588600	Strong transcription	Placenta	Placenta
42	chr11:74584600-74587800	Strong transcription	Primary T cells from cord blood	blood
43	chr11:74584600-74588000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:74584800-74588400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:74584800-74594400	Weak transcription	Thymus	Thymus
46	chr11:74584800-74594600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr11:74584800-74594600	Weak transcription	Fetal Kidney	kidney
48	chr11:74584800-74594600	Weak transcription	Small Intestine	intestine
49	chr11:74584800-74595800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr11:74585000-74587800	Weak transcription	NHLF	lung

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