The 2.0 version of rSNPBase

Variant report

Variant rs72988553
Chromosome Location chr1:114172531-114172532
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:114100600-114173400 Weak transcription Gastric stomach
2 chr1:114119200-114173000 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:114140600-114172800 Weak transcription Colonic Mucosa Colon
4 chr1:114151400-114172600 Weak transcription Ovary ovary
5 chr1:114159000-114173200 Weak transcription HUES48 Cell Line embryonic stem cell
6 chr1:114159000-114195000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:114159200-114194800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr1:114161600-114184600 Weak transcription Colon Smooth Muscle Colon
9 chr1:114161600-114184600 Weak transcription HepG2 liver
10 chr1:114161800-114199800 Weak transcription Skeletal Muscle Female skeletal muscle
11 chr1:114162200-114184600 Weak transcription Left Ventricle heart
12 chr1:114164000-114172600 Weak transcription Rectal Mucosa Donor 29 rectum
13 chr1:114166600-114172800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr1:114167000-114172600 Weak transcription Liver Liver
15 chr1:114168000-114173000 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr1:114169200-114189400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr1:114169400-114173000 Weak transcription Duodenum Mucosa Duodenum
18 chr1:114169400-114184600 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr1:114170000-114172600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr1:114170800-114184600 Weak transcription Stomach Smooth Muscle stomach
21 chr1:114171000-114172600 Weak transcription Skeletal Muscle Male skeletal muscle
22 chr1:114171200-114174400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:114171600-114173000 ZNF genes & repeats Fetal Intestine Large intestine
24 chr1:114171600-114241400 Weak transcription Right Ventricle heart
25 chr1:114171800-114173400 Strong transcription Fetal Lung lung
26 chr1:114172000-114174400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
27 chr1:114172200-114173000 Weak transcription Fetal Muscle Trunk muscle
28 chr1:114172400-114172600 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
29 chr1:114172400-114172600 ZNF genes & repeats Fetal Adrenal Gland Adrenal Gland
30 chr1:114172400-114172600 Genic enhancers Pancreas Pancrea
31 chr1:114172400-114172800 Weak transcription Primary T cells from cord blood blood
32 chr1:114172400-114173000 ZNF genes & repeats Aorta Aorta
33 chr1:114172400-114173000 ZNF genes & repeats Esophagus oesophagus
34 chr1:114172400-114173200 ZNF genes & repeats Fetal Stomach stomach
35 chr1:114172400-114173600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr1:114172400-114173600 Enhancers Placenta Placenta
37 chr1:114172400-114173800 ZNF genes & repeats Fetal Intestine Small intestine
38 chr1:114172400-114174000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
39 chr1:114172400-114182000 Weak transcription Fetal Muscle Leg muscle
40 chr1:114172400-114184600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr1:114172400-114192600 Weak transcription Pancreatic Islets Pancreatic Islet

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Last update: Aug 31, 2015