Variant report

Variant	rs72988707
Chromosome Location	chr6:140295101-140295102
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139696942..139698780-chr6:140294038..140296688,2	K562	blood:
2	chr6:140289417..140292711-chr6:140293441..140296166,4	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72975822	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140287800-140299000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:140289600-140297200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:140291600-140302000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:140292600-140297000	Weak transcription	Placenta	Placenta
5	chr6:140292600-140306000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:140292800-140295200	Weak transcription	Adipose Nuclei	Adipose
7	chr6:140294200-140296400	Enhancers	Fetal Lung	lung
8	chr6:140294200-140296600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:140294200-140299400	Enhancers	Fetal Heart	heart
10	chr6:140294400-140295200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr6:140294400-140296400	Enhancers	Osteobl	bone
12	chr6:140294600-140295600	Enhancers	NHLF	lung
13	chr6:140294600-140296400	Enhancers	Hela-S3	cervix
14	chr6:140294800-140295200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:140294800-140295200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr6:140294800-140295400	Enhancers	Fetal Stomach	stomach
17	chr6:140294800-140295400	Enhancers	A549	lung
18	chr6:140294800-140295400	Enhancers	NHDF-Ad	bronchial
19	chr6:140294800-140295600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:140294800-140295600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:140294800-140295600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:140294800-140295600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:140294800-140295600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:140294800-140295600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr6:140294800-140295600	Active TSS	Right Atrium	heart
26	chr6:140294800-140295800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:140294800-140295800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:140294800-140295800	Enhancers	HUVEC	blood vessel
29	chr6:140294800-140295800	Enhancers	NH-A	brain
30	chr6:140295000-140295200	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr6:140295000-140295200	Active TSS	Stomach Smooth Muscle	stomach
32	chr6:140295000-140295400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:140295000-140295400	Enhancers	Fetal Kidney	kidney
34	chr6:140295000-140295400	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr6:140295000-140295400	Enhancers	HSMMtube	muscle
36	chr6:140295000-140295400	Flanking Active TSS	K562	blood
37	chr6:140295000-140295600	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr6:140295000-140295800	Enhancers	Rectal Smooth Muscle	rectum
39	chr6:140295000-140295800	Enhancers	HSMM	muscle

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