Variant report

Variant	rs7298982
Chromosome Location	chr12:21475627-21475628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12307592	0.86[MKK][hapmap]
rs7975612	1.00[YRI][hapmap]
rs7980742	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21473800-21477800	Active TSS	Brain Angular Gyrus	brain
2	chr12:21473800-21477800	Active TSS	Brain Cingulate Gyrus	brain
3	chr12:21473800-21478200	Active TSS	Brain Anterior Caudate	brain
4	chr12:21474600-21477800	Active TSS	Brain Hippocampus Middle	brain
5	chr12:21474800-21478000	Active TSS	Brain Substantia Nigra	brain
6	chr12:21475200-21475800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr12:21475200-21476000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr12:21475400-21478000	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr12:21475600-21477400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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