Variant report

Variant	rs72989908
Chromosome Location	chr11:75209828-75209829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75199608..75202442-chr11:75207814..75209873,2	K562	blood:
2	chr11:75209740..75211543-chr11:75211641..75214647,3	MCF-7	breast:
3	chr11:75035315..75036959-chr11:75209813..75212313,2	MCF-7	breast:
4	chr11:75186128..75188167-chr11:75208590..75210780,2	MCF-7	breast:
5	chr11:75202940..75204464-chr11:75209500..75211854,2	MCF-7	breast:
6	chr11:75209084..75211834-chr11:75212223..75216689,4	K562	blood:
7	chr11:75207844..75209994-chr11:75218744..75220757,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158555	Chromatin interaction
ENSG00000254460	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11236439	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75200000-75219600	Weak transcription	Fetal Brain Female	brain
2	chr11:75202400-75210000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:75203800-75210800	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr11:75203800-75210800	Weak transcription	Colonic Mucosa	Colon
5	chr11:75203800-75217800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:75203800-75219200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr11:75204000-75216600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:75204200-75213400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr11:75204400-75210600	Weak transcription	Spleen	Spleen
10	chr11:75206800-75214200	Enhancers	Placenta	Placenta
11	chr11:75207000-75210800	Weak transcription	Gastric	stomach
12	chr11:75207400-75210200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr11:75207400-75216400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:75207600-75210000	Weak transcription	Right Atrium	heart
15	chr11:75207600-75210600	Weak transcription	Lung	lung
16	chr11:75207600-75216400	Weak transcription	Left Ventricle	heart
17	chr11:75207800-75210000	Weak transcription	Pancreas	Pancrea
18	chr11:75207800-75210200	Weak transcription	HUVEC	blood vessel
19	chr11:75207800-75210400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:75208200-75212200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:75208400-75212400	Enhancers	HSMMtube	muscle
22	chr11:75208800-75210200	Enhancers	Osteobl	bone
23	chr11:75208800-75210800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:75208800-75210800	Enhancers	HSMM	muscle
25	chr11:75208800-75211200	Genic enhancers	HepG2	liver
26	chr11:75209000-75210000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:75209000-75210200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:75209000-75212200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr11:75209000-75213400	Enhancers	Adipose Nuclei	Adipose
30	chr11:75209200-75211200	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr11:75209200-75211400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:75209200-75211400	Enhancers	Colon Smooth Muscle	Colon
33	chr11:75209200-75211600	Flanking Active TSS	Hela-S3	cervix
34	chr11:75209200-75211800	Enhancers	NHDF-Ad	bronchial
35	chr11:75209200-75212800	Enhancers	HMEC	breast
36	chr11:75209200-75213000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:75209200-75213400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:75209400-75211200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:75209400-75211600	Enhancers	NHLF	lung
40	chr11:75209400-75212400	Enhancers	Fetal Muscle Leg	muscle
41	chr11:75209400-75212600	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr11:75209600-75210000	Enhancers	Muscle Satellite Cultured Cells	--
43	chr11:75209600-75210800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr11:75209600-75211000	Enhancers	Fetal Intestine Large	intestine
45	chr11:75209600-75211200	Genic enhancers	Fetal Intestine Small	intestine
46	chr11:75209600-75211400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:75209600-75212400	Enhancers	NHEK	skin
48	chr11:75209600-75212600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr11:75209600-75212800	Enhancers	Fetal Muscle Trunk	muscle
50	chr11:75209800-75210000	Enhancers	Rectal Mucosa Donor 31	rectum

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