Variant report

Variant	rs72990431
Chromosome Location	chr6:143525568-143525569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143507451..143510189-chr6:143525522..143527663,2	K562	blood:
2	chr6:143515436..143519922-chr6:143520164..143527026,9	K562	blood:
3	chr6:143514687..143516839-chr6:143523728..143526695,2	MCF-7	breast:
4	chr6:143522707..143524777-chr6:143525389..143527804,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34637629	0.85[AFR][1000 genomes]
rs56166281	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72990423	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72990433	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72990434	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7748824	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143458800-143529200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:143479600-143534600	Weak transcription	Gastric	stomach
3	chr6:143498000-143526000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:143499200-143534600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:143501400-143534800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:143505600-143534600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:143514200-143545400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:143514400-143545200	Weak transcription	HMEC	breast
9	chr6:143516000-143545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:143516400-143525600	Weak transcription	Liver	Liver
11	chr6:143517200-143528200	Weak transcription	Psoas Muscle	Psoas
12	chr6:143517400-143525800	Weak transcription	Fetal Stomach	stomach
13	chr6:143520000-143527200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:143520200-143533600	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:143521000-143526400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:143522800-143526000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:143523400-143526600	Weak transcription	Brain Angular Gyrus	brain
18	chr6:143524400-143525800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
19	chr6:143524400-143526000	Weak transcription	Fetal Heart	heart
20	chr6:143524400-143535200	Weak transcription	Right Atrium	heart
21	chr6:143524600-143531200	Strong transcription	K562	blood
22	chr6:143524800-143525600	ZNF genes & repeats	HepG2	liver
23	chr6:143525200-143525600	ZNF genes & repeats	Aorta	Aorta
24	chr6:143525200-143525600	ZNF genes & repeats	Left Ventricle	heart
25	chr6:143525200-143525800	ZNF genes & repeats	Fetal Intestine Large	intestine
26	chr6:143525200-143525800	ZNF genes & repeats	HSMM	muscle
27	chr6:143525400-143525800	ZNF genes & repeats	Esophagus	oesophagus
28	chr6:143525400-143525800	ZNF genes & repeats	Fetal Intestine Small	intestine
29	chr6:143525400-143525800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
30	chr6:143525400-143527000	Weak transcription	NHEK	skin

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