Variant report

Variant	rs7299176
Chromosome Location	chr12:106012788-106012789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10861463	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11112619	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11112620	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11112621	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11112622	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11112623	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4293219	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4483695	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4595642	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4631983	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106006600-106017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:106011000-106016200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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