Variant report

Variant	rs72994556
Chromosome Location	chr4:174087952-174087953
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:174087536-174088638	PANC-1	pancreas:	n/a	n/a
2	FOSL2	chr4:174087638-174088178	SK-N-SH	brain:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:174087023..174089565-chr4:174159233..174161373,2	MCF-7	breast:
2	chr4:174046313..174049132-chr4:174086110..174088705,2	K562	blood:
3	chr4:174087322..174089631-chr4:174102847..174104512,2	K562	blood:
4	chr4:174072381..174074317-chr4:174086673..174089260,2	K562	blood:
5	chr4:174084331..174086204-chr4:174086936..174089803,3	MCF-7	breast:

No data

Variant related genes	Relation type
GALNT7	TF binding region

rs_ID	r²[population]
rs59098468	0.89[AFR][1000 genomes]
rs61445751	0.89[AFR][1000 genomes]
rs72994576	1.00[AFR][1000 genomes]

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174066800-174089000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:174066800-174089000	Weak transcription	HSMM	muscle
3	chr4:174069200-174088800	Weak transcription	HMEC	breast
4	chr4:174072200-174089000	Weak transcription	Fetal Stomach	stomach
5	chr4:174073600-174089000	Weak transcription	Pancreas	Pancrea
6	chr4:174073600-174089200	Weak transcription	Aorta	Aorta
7	chr4:174073800-174089000	Weak transcription	NHLF	lung
8	chr4:174074600-174088800	Weak transcription	Fetal Intestine Small	intestine
9	chr4:174075400-174088600	Weak transcription	Fetal Intestine Large	intestine
10	chr4:174075800-174088800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr4:174076400-174088400	Weak transcription	Primary T cells from cord blood	blood
12	chr4:174077200-174088800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr4:174077800-174089000	Weak transcription	Primary B cells from peripheral blood	blood
14	chr4:174078400-174088800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:174079600-174088800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:174080000-174089000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:174081000-174088200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:174081000-174088400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:174081000-174088800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:174081000-174089000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:174081200-174089000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:174082200-174088800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr4:174082800-174088000	Weak transcription	K562	blood
24	chr4:174083400-174089000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr4:174083600-174089000	Weak transcription	Brain Substantia Nigra	brain
26	chr4:174083800-174089000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:174084000-174088800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:174084200-174089000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr4:174084400-174088000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:174084400-174089000	Weak transcription	Brain Hippocampus Middle	brain
31	chr4:174084800-174088800	Weak transcription	Fetal Heart	heart
32	chr4:174084800-174089000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr4:174085000-174088800	Weak transcription	Brain Anterior Caudate	brain
34	chr4:174085000-174088800	Weak transcription	NHEK	skin
35	chr4:174085200-174089000	Weak transcription	Adipose Nuclei	Adipose
36	chr4:174085200-174089000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr4:174085400-174088000	Strong transcription	Fetal Muscle Leg	muscle
38	chr4:174085400-174088800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr4:174085400-174088800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:174085400-174089000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr4:174085600-174088800	Weak transcription	Fetal Lung	lung
42	chr4:174085600-174089000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr4:174086200-174088000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr4:174086200-174088800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr4:174086200-174089000	Weak transcription	Esophagus	oesophagus
46	chr4:174086600-174088000	Weak transcription	HUVEC	blood vessel
47	chr4:174086600-174088800	Enhancers	Fetal Thymus	thymus
48	chr4:174086600-174089000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr4:174086800-174088400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr4:174086800-174088800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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