Variant report

Variant	rs72994952
Chromosome Location	chr2:142629105-142629106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10164835	1.00[AMR][1000 genomes]
rs10197149	1.00[AMR][1000 genomes]
rs10211128	1.00[AMR][1000 genomes]
rs61666362	1.00[AMR][1000 genomes]
rs72993080	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1009893	chr2:142585905-142662116	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv459674	chr2:142592560-142636907	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv583237	chr2:142592560-142636907	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142628200-142629200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:142628400-142629400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:142628400-142629600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:142628600-142629400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:142628600-142629800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr2:142628800-142629200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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