Variant report
| Variant | rs7299562 |
|---|---|
| Chromosome Location | chr12:55972785-55972786 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10747758 | 0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10783760 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10876814 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10876818 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11171573 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11171574 | 0.94[EUR][1000 genomes] |
| rs11171579 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11171588 | 0.86[EUR][1000 genomes] |
| rs11171589 | 0.88[EUR][1000 genomes] |
| rs11171590 | 0.85[EUR][1000 genomes] |
| rs11171591 | 0.85[EUR][1000 genomes] |
| rs11171592 | 0.88[EUR][1000 genomes] |
| rs1896035 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1896037 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2555036 | 0.85[ASN][1000 genomes] |
| rs4759162 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4759163 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4759173 | 0.89[EUR][1000 genomes] |
| rs7134292 | 0.97[EUR][1000 genomes] |
| rs7137741 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7138577 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7299541 | 0.82[AMR][1000 genomes] |
| rs7305194 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv559001 | chr12:55507465-56057708 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 45 gene(s) | inside rSNPs | diseases |
| 2 | nsv832422 | chr12:55832210-56001052 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv948625 | chr12:55838718-56118833 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:55968600-55974000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
