Variant report

Variant	rs72995842
Chromosome Location	chr11:120630028-120630029
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120629321..120630296-chr11:120800283..120801141,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10502242	0.83[EUR][1000 genomes]
rs11218005	0.83[EUR][1000 genomes]
rs11218006	0.83[EUR][1000 genomes]
rs11218007	0.83[EUR][1000 genomes]
rs11820186	0.83[EUR][1000 genomes]
rs11822437	0.83[EUR][1000 genomes]
rs11824814	0.83[EUR][1000 genomes]
rs17124301	0.83[EUR][1000 genomes]
rs17124324	0.83[EUR][1000 genomes]
rs2846104	0.83[EUR][1000 genomes]
rs72995856	0.83[EUR][1000 genomes]
rs72995858	0.83[EUR][1000 genomes]
rs7934092	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054407	chr11:120535570-120630114	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1041465	chr11:120582595-120630114	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv541180	chr11:120582595-120630114	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120623000-120630600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:120623800-120636800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:120629000-120630200	Enhancers	HSMMtube	muscle
4	chr11:120629600-120630200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:120629600-120630200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:120629600-120630200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:120629600-120630200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:120629600-120630400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr11:120629800-120630200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:120629800-120630200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr11:120629800-120630400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr11:120629800-120630400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr11:120629800-120630400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:120629800-120630400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr11:120629800-120630400	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:120629800-120630400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:120629800-120630400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr11:120629800-120630400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr11:120630000-120630200	Enhancers	Brain Cingulate Gyrus	brain
20	chr11:120630000-120630200	Enhancers	Right Atrium	heart
21	chr11:120630000-120630400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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