Variant report

Variant	rs73000156
Chromosome Location	chr4:173771914-173771915
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17058968	0.94[AFR][1000 genomes]
rs60683730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73000149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73000151	1.00[AMR][1000 genomes]
rs73000152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73000164	0.94[AFR][1000 genomes]
rs73000168	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv968039	chr4:173753530-173772714	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv881394	chr4:173757115-173847405	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv967705	chr4:173769496-173776749	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173771200-173773400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:173771600-173772400	Enhancers	Hela-S3	cervix
3	chr4:173771600-173773000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:173771600-173773200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:173771600-173773200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:173771600-173773200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:173771600-173773400	Enhancers	HMEC	breast
8	chr4:173771800-173772000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:173771800-173772200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:173771800-173772200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:173771800-173772400	Enhancers	A549	lung
12	chr4:173771800-173772600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:173771800-173772600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:173771800-173772800	Enhancers	HSMM	muscle
15	chr4:173771800-173773000	Enhancers	NH-A	brain
16	chr4:173771800-173773000	Enhancers	NHEK	skin
17	chr4:173771800-173773200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:173771800-173773200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr4:173771800-173773200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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