Variant report

Variant	rs73000336
Chromosome Location	chr3:141498917-141498918
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11542226	0.83[EUR][1000 genomes]
rs1533501	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4588340	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58115387	0.83[EUR][1000 genomes]
rs60317930	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72982481	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7643689	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141472000-141500800	Weak transcription	Thymus	Thymus
2	chr3:141497800-141505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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