Variant report

Variant	rs73001352
Chromosome Location	chr3:150297797-150297798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:150296789..150298714-chr3:150319542..150322341,2	MCF-7	breast:
2	chr3:150295926..150298011-chr3:150304810..150307775,2	MCF-7	breast:
3	chr3:150297183..150299221-chr3:150310193..150312196,2	K562	blood:
4	chr3:150296057..150298158-chr3:150306282..150308103,2	K562	blood:
5	chr3:150284751..150287895-chr3:150296072..150299442,3	K562	blood:
6	chr3:150295884..150298630-chr3:150301132..150305152,4	K562	blood:

Variant related genes	Relation type
ENSG00000144895	Chromatin interaction
ENSG00000120742	Chromatin interaction
ENSG00000198843	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73001325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73003034	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150265200-150299400	Weak transcription	Esophagus	oesophagus
2	chr3:150265200-150302800	Weak transcription	Gastric	stomach
3	chr3:150265400-150305800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:150265600-150304200	Weak transcription	Fetal Brain Male	brain
5	chr3:150265600-150320600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:150265600-150320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:150266000-150304600	Weak transcription	Fetal Heart	heart
8	chr3:150266000-150307600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:150266400-150302200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:150268600-150304000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr3:150274000-150303000	Weak transcription	Pancreas	Pancrea
12	chr3:150274800-150300600	Weak transcription	Stomach Mucosa	stomach
13	chr3:150277200-150305200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr3:150278000-150306800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:150278200-150304800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr3:150278400-150306400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:150279400-150303800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:150280000-150304800	Strong transcription	Fetal Thymus	thymus
19	chr3:150280200-150304400	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr3:150280200-150304600	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr3:150280200-150304800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:150280200-150305000	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:150280200-150307800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr3:150280800-150300400	Strong transcription	Liver	Liver
25	chr3:150281400-150303800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:150283200-150305200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr3:150286600-150305400	Weak transcription	Colonic Mucosa	Colon
28	chr3:150289600-150303800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr3:150289800-150303600	Strong transcription	Hela-S3	cervix
30	chr3:150289800-150304000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr3:150290400-150298400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr3:150291600-150306200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:150291800-150303000	Strong transcription	Primary B cells from cord blood	blood
34	chr3:150291800-150304000	Strong transcription	Dnd41	blood
35	chr3:150292000-150304800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:150292400-150299600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:150292400-150304000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:150292600-150299800	Weak transcription	Colon Smooth Muscle	Colon
39	chr3:150292800-150299000	Strong transcription	GM12878-XiMat	blood
40	chr3:150293200-150298800	Strong transcription	Duodenum Mucosa	Duodenum
41	chr3:150293200-150303800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr3:150293400-150299800	Strong transcription	NHDF-Ad	bronchial
43	chr3:150293400-150302800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr3:150293400-150303800	Strong transcription	Adipose Nuclei	Adipose
45	chr3:150293400-150303800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr3:150293400-150304800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr3:150293600-150299200	Strong transcription	Left Ventricle	heart
48	chr3:150293800-150304000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:150294000-150303800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr3:150294200-150299400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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