Variant report

Variant	rs73003340
Chromosome Location	chr3:142672500-142672501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142668138..142670441-chr3:142671442..142674253,2	K562	blood:
2	chr3:142669464..142674589-chr3:142676455..142683830,12	K562	blood:
3	chr3:142665911..142667875-chr3:142670714..142673324,3	K562	blood:
4	chr3:142670834..142673882-chr3:142694771..142697300,3	K562	blood:
5	chr3:142656522..142658670-chr3:142671926..142673545,2	K562	blood:
6	chr3:142596342..142599024-chr3:142671060..142673043,2	MCF-7	breast:
7	chr3:142671255..142673627-chr3:142694545..142697300,2	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000243818	Chromatin interaction
ENSG00000163714	Chromatin interaction
ENSG00000188582	Chromatin interaction
ENSG00000241570	Chromatin interaction
ENSG00000241592	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1392179	0.93[AFR][1000 genomes]
rs28502739	0.89[AFR][1000 genomes]
rs73003343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73003350	1.00[AFR][1000 genomes]
rs73003373	0.93[AFR][1000 genomes]
rs9844480	0.82[AFR][1000 genomes]
rs9854774	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877562	chr3:142573789-142846370	Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv4040	chr3:142649146-142675752	Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv877563	chr3:142661350-142743889	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142667200-142681000	Weak transcription	Right Ventricle	heart
2	chr3:142669200-142680800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:142671400-142672800	Enhancers	Liver	Liver
4	chr3:142671600-142672600	Enhancers	Left Ventricle	heart
5	chr3:142671600-142672800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:142671800-142672600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr3:142671800-142672600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr3:142671800-142672600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:142672000-142673000	Enhancers	K562	blood
10	chr3:142672200-142672800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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