Variant report

Variant	rs73003554
Chromosome Location	chr3:155523512-155523513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:155522507..155525053-chr3:155587874..155590161,2	MCF-7	breast:
2	chr3:155476567..155478417-chr3:155522248..155524245,2	MCF-7	breast:
3	chr3:155520264..155525290-chr3:155586627..155590296,8	K562	blood:
4	chr3:155522731..155527439-chr3:155568712..155573851,7	MCF-7	breast:
5	chr3:155520823..155524412-chr3:155585049..155590112,5	MCF-7	breast:
6	chr3:155521670..155525457-chr3:155569550..155572694,3	MCF-7	breast:
7	chr3:155522613..155525345-chr3:155572139..155575204,3	K562	blood:
8	chr3:155522875..155525089-chr3:155569917..155571770,3	K562	blood:
9	chr3:155522036..155526613-chr3:155586597..155592084,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000163655	Chromatin interaction
ENSG00000241307	Chromatin interaction
ENSG00000169359	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16825394	1.00[EUR][1000 genomes]
rs16825406	1.00[EUR][1000 genomes]
rs16834525	1.00[EUR][1000 genomes]
rs17414151	1.00[EUR][1000 genomes]
rs58556929	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73005140	1.00[EUR][1000 genomes]
rs73018954	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877680	chr3:155438022-155723064	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1014031	chr3:155481097-155524777	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv999641	chr3:155481097-155534616	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	esv2753744	chr3:155487298-155707298	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155487600-155524200	Weak transcription	Fetal Heart	heart
2	chr3:155494400-155523600	Weak transcription	Small Intestine	intestine
3	chr3:155515800-155523600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr3:155522600-155523600	Flanking Active TSS	Dnd41	blood
5	chr3:155523000-155523600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr3:155523000-155523600	Flanking Active TSS	Duodenum Mucosa	Duodenum
7	chr3:155523000-155523800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:155523000-155524200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:155523000-155524200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:155523000-155524200	Active TSS	Primary T cells from cord blood	blood
11	chr3:155523000-155524200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:155523000-155524200	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr3:155523000-155524200	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr3:155523000-155524400	Active TSS	Brain Anterior Caudate	brain
15	chr3:155523000-155524600	Active TSS	Brain Hippocampus Middle	brain
16	chr3:155523000-155524600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:155523000-155524600	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr3:155523000-155524600	Active TSS	Monocytes-CD14+_RO01746	blood
19	chr3:155523000-155524600	Active TSS	Osteobl	bone
20	chr3:155523200-155523600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:155523200-155523600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
22	chr3:155523200-155523600	Flanking Active TSS	Primary hematopoietic stem cells	blood
23	chr3:155523200-155523600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr3:155523200-155523600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:155523200-155523600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
26	chr3:155523200-155523600	Active TSS	Right Atrium	heart
27	chr3:155523200-155523600	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr3:155523200-155523800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
29	chr3:155523200-155523800	Active TSS	Primary hematopoietic stem cells short term culture	blood
30	chr3:155523200-155523800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr3:155523200-155523800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:155523200-155524000	Active TSS	Primary B cells from cord blood	blood
33	chr3:155523200-155524000	Active TSS	Rectal Mucosa Donor 31	rectum
34	chr3:155523200-155524200	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr3:155523200-155524200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:155523200-155524200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
37	chr3:155523200-155524200	Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr3:155523200-155524200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:155523200-155524200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr3:155523200-155524200	Active TSS	Rectal Smooth Muscle	rectum
41	chr3:155523200-155524200	Active TSS	Skeletal Muscle Male	skeletal muscle
42	chr3:155523200-155524200	Active TSS	Thymus	Thymus
43	chr3:155523200-155524200	Active TSS	Spleen	Spleen
44	chr3:155523200-155524200	Active TSS	GM12878-XiMat	blood
45	chr3:155523200-155524200	Active TSS	Hela-S3	cervix
46	chr3:155523200-155524200	Active TSS	NHLF	lung
47	chr3:155523200-155524400	Active TSS	H1 Cell Line	embryonic stem cell
48	chr3:155523200-155524400	Active TSS	H9 Cell Line	embryonic stem cell
49	chr3:155523200-155524400	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr3:155523200-155524400	Active TSS	HUES64 Cell Line	embryonic stem cell

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