Variant report

Variant	rs73003668
Chromosome Location	chr6:133859447-133859448
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11964505	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11964979	0.88[ASN][1000 genomes]
rs11968532	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11969376	0.88[ASN][1000 genomes]
rs11969485	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11970169	0.88[ASN][1000 genomes]
rs12110683	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17053540	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17053541	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17053542	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17643040	0.83[EUR][1000 genomes]
rs3777886	0.87[ASN][1000 genomes]
rs3777887	0.87[ASN][1000 genomes]
rs3822938	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4053065	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41286206	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs41286212	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55865377	0.89[EUR][1000 genomes]
rs55903152	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59080198	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60337650	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60797218	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67351386	0.87[ASN][1000 genomes]
rs67720873	0.88[ASN][1000 genomes]
rs6911415	0.88[ASN][1000 genomes]
rs6911552	0.88[ASN][1000 genomes]
rs6912858	0.88[ASN][1000 genomes]
rs6921393	0.87[ASN][1000 genomes]
rs6929938	0.88[ASN][1000 genomes]
rs6934616	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7453259	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7743115	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7749529	0.88[ASN][1000 genomes]
rs7767007	0.90[EUR][1000 genomes]
rs7771096	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7771144	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886681	chr6:133833284-133869617	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs73003668	RP1-283K11.3	cis	lung	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133823200-133869600	Weak transcription	Psoas Muscle	Psoas
2	chr6:133824400-133861600	Weak transcription	Ovary	ovary
3	chr6:133826600-133862400	Weak transcription	Fetal Lung	lung
4	chr6:133837400-133863600	Weak transcription	A549	lung
5	chr6:133845400-133860400	Weak transcription	HSMMtube	muscle
6	chr6:133854800-133866200	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:133855000-133862800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:133855000-133863200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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