Variant report

Variant	rs73004609
Chromosome Location	chr3:147088424-147088425
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16859381	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73004605	1.00[EUR][1000 genomes]
rs73004607	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013080	chr3:147008962-147167690	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536763	chr3:147008962-147167690	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:147085200-147089200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
2	chr3:147085400-147091600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:147086000-147091400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr3:147086600-147089000	Bivalent/Poised TSS	NH-A	brain
5	chr3:147086800-147088800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:147087000-147088600	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr3:147087800-147088600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr3:147087800-147089000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr3:147088000-147089000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr3:147088200-147088600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:147088200-147088600	Bivalent/Poised TSS	Cortex derived primary cultured neurospheres	brain
12	chr3:147088400-147088600	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:147088400-147089200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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