Variant report

Variant	rs73005907
Chromosome Location	chr2:152343170-152343171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:152343156..152345753-chr2:152361266..152362840,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TNFAIP6-6	chr2:152342791-152343270	NONHSAT074958

Variant related genes	Relation type
ENSG00000080345	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11685727	0.80[AFR][1000 genomes]
rs16823297	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2444258	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2444265	0.89[AFR][1000 genomes]
rs2444268	0.85[AFR][1000 genomes]
rs2444273	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4414676	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73005906	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73005917	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7585604	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013484	chr2:152028515-152473913	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv535983	chr2:152028515-152473913	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1012139	chr2:152114637-152389516	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1011339	chr2:152114637-152392940	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv999748	chr2:152135514-152476396	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv834418	chr2:152205803-152385516	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
7	nsv933869	chr2:152308156-152391576	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv934136	chr2:152308156-152664443	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv437298	chr2:152320118-152356361	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3693428	chr2:152320932-152434896	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152267600-152379400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:152295800-152348400	Weak transcription	Right Ventricle	heart
3	chr2:152301800-152343800	Weak transcription	Gastric	stomach
4	chr2:152304800-152354000	Weak transcription	Spleen	Spleen
5	chr2:152314000-152344000	Weak transcription	Esophagus	oesophagus
6	chr2:152314000-152349400	Weak transcription	Pancreas	Pancrea
7	chr2:152320400-152343800	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:152320800-152343600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr2:152320800-152358600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:152324000-152348800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:152324200-152382400	Weak transcription	Aorta	Aorta
12	chr2:152325600-152348800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:152326200-152344200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr2:152326200-152347400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:152326400-152367400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr2:152326600-152348000	Weak transcription	Brain Substantia Nigra	brain
17	chr2:152327200-152343800	Weak transcription	Thymus	Thymus
18	chr2:152327200-152347400	Weak transcription	Brain Angular Gyrus	brain
19	chr2:152327400-152343400	Weak transcription	Fetal Brain Male	brain
20	chr2:152327400-152344800	Weak transcription	Brain Anterior Caudate	brain
21	chr2:152327800-152346800	Weak transcription	Colon Smooth Muscle	Colon
22	chr2:152327800-152347800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr2:152328400-152344000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr2:152328400-152347000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr2:152329400-152344200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr2:152330600-152346800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr2:152332000-152345400	Weak transcription	Brain Hippocampus Middle	brain
28	chr2:152332000-152350400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr2:152332200-152344600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr2:152332400-152350800	Weak transcription	NHDF-Ad	bronchial
31	chr2:152333400-152343200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr2:152334000-152349400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:152334400-152343400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr2:152334400-152343800	Strong transcription	Fetal Muscle Trunk	muscle
35	chr2:152335000-152346800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr2:152335200-152349400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr2:152336200-152343800	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr2:152336400-152343600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr2:152336800-152343200	Strong transcription	Primary B cells from cord blood	blood
40	chr2:152336800-152355000	Strong transcription	Fetal Muscle Leg	muscle
41	chr2:152337400-152343800	Strong transcription	HSMM	muscle
42	chr2:152337400-152348800	Weak transcription	Hela-S3	cervix
43	chr2:152338000-152343400	Strong transcription	Adipose Nuclei	Adipose
44	chr2:152338000-152346800	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr2:152338200-152356600	Strong transcription	HSMMtube	muscle
46	chr2:152338200-152370000	Strong transcription	Skeletal Muscle Male	skeletal muscle
47	chr2:152338400-152347200	Weak transcription	HMEC	breast
48	chr2:152338400-152349000	Weak transcription	HUVEC	blood vessel
49	chr2:152338600-152343800	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr2:152338600-152348800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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