Variant report

Variant	rs73006226
Chromosome Location	chr11:108072728-108072729
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:108069760..108073247-chr11:108087565..108091000,4	K562	blood:
2	chr11:108072326..108074040-chr11:108074977..108077397,2	K562	blood:
3	chr11:108071455..108073247-chr11:108087977..108089768,2	K562	blood:
4	chr11:108070782..108073415-chr11:108095744..108098057,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1519074	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1801516	1.00[AFR][1000 genomes]
rs3092991	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3092993	1.00[AFR][1000 genomes]
rs4753835	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4754300	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4988023	1.00[AFR][1000 genomes]
rs55949629	1.00[AFR][1000 genomes]
rs55985317	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61913672	0.83[AFR][1000 genomes]
rs73006208	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73006241	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73008229	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533794	chr11:107349817-108093259	Bivalent Enhancer Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108017000-108075000	Strong transcription	Dnd41	blood
2	chr11:108032600-108075000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:108040400-108074000	Weak transcription	Fetal Brain Male	brain
4	chr11:108041600-108074000	Weak transcription	Small Intestine	intestine
5	chr11:108050000-108074800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:108053800-108075600	Weak transcription	Fetal Heart	heart
7	chr11:108057600-108075000	Weak transcription	Colonic Mucosa	Colon
8	chr11:108060000-108077000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:108060000-108077000	Weak transcription	NHLF	lung
10	chr11:108060200-108076800	Weak transcription	Hela-S3	cervix
11	chr11:108061800-108075000	Weak transcription	Ovary	ovary
12	chr11:108062600-108090800	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:108063400-108077200	Weak transcription	NHDF-Ad	bronchial
14	chr11:108065200-108074400	Weak transcription	Fetal Kidney	kidney
15	chr11:108065400-108075400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
16	chr11:108067200-108073200	Weak transcription	HUVEC	blood vessel
17	chr11:108067200-108073600	Weak transcription	Fetal Lung	lung
18	chr11:108067200-108076800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr11:108067400-108076400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr11:108067400-108077000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:108067600-108073000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:108067600-108073400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:108067600-108076800	Weak transcription	Adipose Nuclei	Adipose
24	chr11:108067800-108074400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:108067800-108074600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:108068000-108074200	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr11:108068000-108074800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
28	chr11:108068000-108075000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:108068200-108074000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:108068400-108073200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr11:108068800-108074600	Weak transcription	HepG2	liver
32	chr11:108068800-108074800	Weak transcription	Liver	Liver
33	chr11:108069000-108074800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr11:108069000-108074800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr11:108069200-108075400	Genic enhancers	Primary T cells fromperipheralblood	blood
36	chr11:108069400-108073800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:108069600-108072800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr11:108069600-108072800	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:108069600-108072800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:108070000-108074000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:108070000-108075200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr11:108070200-108072800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr11:108070200-108074800	Weak transcription	Pancreas	Pancrea
44	chr11:108070200-108074800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr11:108070200-108075200	Weak transcription	Gastric	stomach
46	chr11:108070200-108076600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr11:108070400-108072800	Genic enhancers	Primary T cells from cord blood	blood
48	chr11:108070400-108072800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr11:108070400-108074400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr11:108070400-108074800	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links