Variant report

Variant	rs73006988
Chromosome Location	chr3:150458678-150458679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150457628..150460204-chr3:150468516..150471242,2	K562	blood:
2	chr3:150456316..150460204-chr3:150468516..150472450,4	K562	blood:
3	chr3:150457697..150460928-chr3:150461063..150463288,3	K562	blood:
4	chr3:150457190..150462784-chr3:150464439..150467778,5	K562	blood:
5	chr3:150442966..150446319-chr3:150451835..150458890,10	K562	blood:
6	chr3:150452566..150460091-chr3:150475752..150483574,15	K562	blood:
7	chr3:150456138..150457755-chr3:150457947..150459556,2	MCF-7	breast:
8	chr3:150450337..150459570-chr3:150476282..150483839,23	K562	blood:

No data

Variant related genes	Relation type
ENSG00000244265	Chromatin interaction
ENSG00000181788	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11919896	1.00[EUR][1000 genomes]
rs73006990	1.00[AMR][1000 genomes]
rs8072	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150439800-150459000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:150451400-150458800	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:150451400-150459200	Weak transcription	HSMMtube	muscle
4	chr3:150451400-150461400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:150451800-150459000	Weak transcription	Dnd41	blood
6	chr3:150451800-150462400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:150453600-150460000	Weak transcription	Lung	lung
8	chr3:150453800-150478000	Weak transcription	Brain Germinal Matrix	brain
9	chr3:150454600-150459000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr3:150454600-150459000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:150454600-150469800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:150454600-150477200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:150454800-150459600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:150454800-150459600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:150454800-150462600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:150454800-150467200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:150455400-150459000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:150455400-150459200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr3:150455600-150458800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr3:150455800-150460000	Weak transcription	Brain Anterior Caudate	brain
21	chr3:150456200-150459600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr3:150456200-150461200	Weak transcription	Colon Smooth Muscle	Colon
23	chr3:150456400-150461600	Weak transcription	Psoas Muscle	Psoas
24	chr3:150456400-150477600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr3:150456600-150458800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr3:150456600-150458800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:150456600-150459000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr3:150456600-150477600	Weak transcription	Fetal Brain Male	brain
29	chr3:150456800-150458800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:150456800-150459000	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr3:150456800-150459000	Weak transcription	Left Ventricle	heart
32	chr3:150456800-150459800	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr3:150456800-150459800	Enhancers	Liver	Liver
34	chr3:150456800-150461000	Weak transcription	Right Atrium	heart
35	chr3:150456800-150461600	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr3:150456800-150462400	Weak transcription	Small Intestine	intestine
37	chr3:150456800-150477400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr3:150457000-150458800	Flanking Active TSS	GM12878-XiMat	blood
39	chr3:150457000-150458800	Weak transcription	Hela-S3	cervix
40	chr3:150457000-150458800	Enhancers	K562	blood
41	chr3:150457000-150459000	Weak transcription	Fetal Brain Female	brain
42	chr3:150457000-150459000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr3:150457000-150459000	Weak transcription	Osteobl	bone
44	chr3:150457000-150460600	Weak transcription	NH-A	brain
45	chr3:150457000-150461200	Weak transcription	Stomach Mucosa	stomach
46	chr3:150457000-150461200	Weak transcription	A549	lung
47	chr3:150457000-150461400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr3:150457000-150461400	Weak transcription	Rectal Smooth Muscle	rectum
49	chr3:150457000-150478800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr3:150457400-150459400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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