Variant report

Variant	rs73008223
Chromosome Location	chr3:143021416-143021417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143015059..143017417-chr3:143020169..143021690,2	MCF-7	breast:
2	chr3:143018946..143021692-chr3:143026388..143029368,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73008226	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	esv2757894	chr3:142992697-143285979	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2759184	chr3:142992697-143285979	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv520125	chr3:143020870-143029022	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143008000-143025000	Weak transcription	Gastric	stomach
2	chr3:143015200-143039600	Weak transcription	Brain Substantia Nigra	brain
3	chr3:143017000-143022400	Enhancers	Fetal Thymus	thymus
4	chr3:143017000-143022600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:143018200-143026400	Weak transcription	GM12878-XiMat	blood
6	chr3:143018400-143021600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:143018400-143039400	Weak transcription	Primary B cells from cord blood	blood
8	chr3:143019000-143022600	Enhancers	Dnd41	blood
9	chr3:143019200-143021600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:143019600-143026600	Enhancers	Fetal Lung	lung
11	chr3:143020200-143021600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:143020200-143023200	Enhancers	K562	blood
13	chr3:143020400-143022600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:143020400-143022800	Enhancers	Spleen	Spleen
15	chr3:143020600-143022600	Enhancers	NHDF-Ad	bronchial
16	chr3:143020800-143021600	Enhancers	Lung	lung
17	chr3:143020800-143022000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:143020800-143022600	Enhancers	Placenta	Placenta
19	chr3:143020800-143022800	Enhancers	Fetal Muscle Leg	muscle
20	chr3:143020800-143023200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:143020800-143023400	Enhancers	Muscle Satellite Cultured Cells	--
22	chr3:143021000-143022000	Enhancers	NHLF	lung
23	chr3:143021000-143022200	Enhancers	HMEC	breast
24	chr3:143021000-143022600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:143021000-143026600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:143021200-143022400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr3:143021200-143022800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:143021200-143029000	Weak transcription	Primary T cells from cord blood	blood
29	chr3:143021400-143021600	Flanking Active TSS	HSMM	muscle
30	chr3:143021400-143021600	Enhancers	HSMMtube	muscle
31	chr3:143021400-143021800	Enhancers	Fetal Kidney	kidney
32	chr3:143021400-143021800	Enhancers	Psoas Muscle	Psoas
33	chr3:143021400-143022000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr3:143021400-143022000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:143021400-143022000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr3:143021400-143022000	Enhancers	Esophagus	oesophagus
37	chr3:143021400-143022000	Flanking Active TSS	HUVEC	blood vessel
38	chr3:143021400-143022000	Enhancers	NH-A	brain
39	chr3:143021400-143022000	Flanking Active TSS	Osteobl	bone
40	chr3:143021400-143022200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr3:143021400-143022200	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr3:143021400-143022200	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr3:143021400-143022200	Enhancers	NHEK	skin
44	chr3:143021400-143022400	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr3:143021400-143022400	Enhancers	Right Atrium	heart
46	chr3:143021400-143022600	Enhancers	Adipose Nuclei	Adipose
47	chr3:143021400-143022800	Enhancers	Left Ventricle	heart
48	chr3:143021400-143024200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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