Variant report
Variant | rs73009167 |
---|---|
Chromosome Location | chr1:152642684-152642685 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:152640283..152643005-chr1:152645549..152648170,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000187180 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1011297 | 0.85[ASN][1000 genomes] |
rs10788844 | 0.87[ASN][1000 genomes] |
rs10888506 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs10888507 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11205045 | 0.85[ASN][1000 genomes] |
rs11205046 | 0.85[ASN][1000 genomes] |
rs11205047 | 0.85[ASN][1000 genomes] |
rs11205048 | 0.85[ASN][1000 genomes] |
rs11205049 | 0.85[ASN][1000 genomes] |
rs11205050 | 0.85[ASN][1000 genomes] |
rs11205056 | 0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs11205061 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs11205062 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11205072 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11205073 | 0.87[ASN][1000 genomes] |
rs11205078 | 0.86[ASN][1000 genomes] |
rs11580546 | 0.85[ASN][1000 genomes] |
rs11581621 | 0.85[ASN][1000 genomes] |
rs11582021 | 0.85[ASN][1000 genomes] |
rs11587218 | 0.85[ASN][1000 genomes] |
rs12032251 | 0.85[ASN][1000 genomes] |
rs12041270 | 0.85[ASN][1000 genomes] |
rs12043198 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12071335 | 0.83[ASN][1000 genomes] |
rs12074783 | 0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12081753 | 0.85[ASN][1000 genomes] |
rs12081793 | 0.85[ASN][1000 genomes] |
rs12239432 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12239456 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12564254 | 0.85[ASN][1000 genomes] |
rs12564476 | 0.83[ASN][1000 genomes] |
rs12566080 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12728742 | 0.85[ASN][1000 genomes] |
rs12745646 | 0.85[ASN][1000 genomes] |
rs12752346 | 0.85[ASN][1000 genomes] |
rs1325508 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1359515 | 0.85[ASN][1000 genomes] |
rs1359516 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1474168 | 0.85[ASN][1000 genomes] |
rs1474169 | 0.85[ASN][1000 genomes] |
rs1575753 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1581802 | 0.85[ASN][1000 genomes] |
rs1581804 | 0.85[ASN][1000 genomes] |
rs16834343 | 0.82[EUR][1000 genomes] |
rs1853805 | 0.87[ASN][1000 genomes] |
rs1886732 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1888966 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1925661 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1925663 | 0.86[ASN][1000 genomes] |
rs1930126 | 0.87[ASN][1000 genomes] |
rs3904414 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs3904415 | 0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs3908717 | 0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4287181 | 0.86[ASN][1000 genomes] |
rs4320779 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4353096 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4540662 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4845317 | 0.86[ASN][1000 genomes] |
rs4845456 | 0.85[ASN][1000 genomes] |
rs4845457 | 0.85[ASN][1000 genomes] |
rs55644922 | 0.85[ASN][1000 genomes] |
rs55687384 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs59349974 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs59540569 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs59633986 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs59863780 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs60208884 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs60350222 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs60861680 | 0.85[ASN][1000 genomes] |
rs66587527 | 0.89[ASN][1000 genomes] |
rs6660162 | 0.85[ASN][1000 genomes] |
rs6662989 | 0.85[ASN][1000 genomes] |
rs6671975 | 0.85[ASN][1000 genomes] |
rs6687570 | 0.85[ASN][1000 genomes] |
rs6687682 | 0.85[ASN][1000 genomes] |
rs6702474 | 0.85[ASN][1000 genomes] |
rs7527788 | 0.85[ASN][1000 genomes] |
rs925976 | 0.85[ASN][1000 genomes] |
rs925977 | 0.85[ASN][1000 genomes] |
rs942826 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs942827 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs960752 | 0.85[ASN][1000 genomes] |
rs989831 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs989832 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs989833 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs989834 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs9970033 | 0.85[ASN][1000 genomes] |
rs9970657 | 0.85[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2750810 | chr1:152453669-152660927 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
2 | esv1827111 | chr1:152472839-152690073 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
3 | esv1830764 | chr1:152472839-152690073 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
4 | esv2757755 | chr1:152472839-152898153 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
5 | esv2758970 | chr1:152472839-152898153 | ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
6 | esv33483 | chr1:152550269-152775526 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
7 | nsv872447 | chr1:152551276-152643160 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
8 | nsv547891 | chr1:152556085-152770446 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
9 | nsv872448 | chr1:152561408-152643160 | Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
10 | nsv469873 | chr1:152563260-152713616 | ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
11 | nsv482518 | chr1:152563260-152713616 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
12 | nsv1001647 | chr1:152572876-152678509 | Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
13 | nsv427786 | chr1:152572990-152898153 | Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
14 | nsv872449 | chr1:152583678-152643160 | Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
15 | nsv1013433 | chr1:152619305-153262215 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
16 | nsv535170 | chr1:152619305-153262215 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 46 gene(s) | inside rSNPs | diseases |
17 | esv3320704 | chr1:152632101-152644065 | Enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
18 | esv3320705 | chr1:152632101-152644065 | Enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
19 | esv3381714 | chr1:152634322-152646230 | Weak transcription Enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
20 | esv3334875 | chr1:152634640-152646008 | Enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
21 | nsv1005047 | chr1:152636316-152656590 | Enhancers Bivalent Enhancer Weak transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
22 | esv3382870 | chr1:152641788-152653697 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |