Variant report

Variant	rs73009288
Chromosome Location	chr2:148959055-148959056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:148695045..148696010-chr2:148958677..148959570,5	K562	blood:
2	chr2:148951330..148953430-chr2:148956133..148959129,2	K562	blood:
3	chr2:148746466..148747928-chr2:148959011..148960040,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115947	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73009234	0.85[AFR][1000 genomes]
rs7569757	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916286	chr2:148438001-148977722	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1001339	chr2:148755022-149020866	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv535977	chr2:148755022-149020866	Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv869146	chr2:148787051-149060763	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv875276	chr2:148844369-148996824	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1004431	chr2:148859099-149054114	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv997674	chr2:148862630-148995570	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1007998	chr2:148866051-148995570	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1009608	chr2:148897348-149133718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv915953	chr2:148934787-148977722	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:148913000-148977600	Weak transcription	Aorta	Aorta
2	chr2:148928600-148993600	Weak transcription	HSMM	muscle
3	chr2:148929800-148960800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:148931000-148960600	Weak transcription	Spleen	Spleen
5	chr2:148931200-148993200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:148938400-148969200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:148941200-148959400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:148943800-148961200	Weak transcription	Fetal Lung	lung
9	chr2:148944000-148987400	Weak transcription	Ovary	ovary
10	chr2:148944200-148978400	Weak transcription	Left Ventricle	heart
11	chr2:148944400-148962200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr2:148944600-148978400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:148954200-148959200	Weak transcription	Fetal Brain Male	brain
14	chr2:148958400-148959200	Weak transcription	Pancreas	Pancrea
15	chr2:148958600-148959200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:148958600-148959200	ZNF genes & repeats	Brain Germinal Matrix	brain
17	chr2:148958600-148959200	ZNF genes & repeats	Fetal Stomach	stomach
18	chr2:148958600-148959200	Enhancers	Lung	lung
19	chr2:148958600-148959400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr2:148958600-148959400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:148958600-148959400	Strong transcription	Primary B cells from cord blood	blood
22	chr2:148958600-148959400	ZNF genes & repeats	Dnd41	blood
23	chr2:148958600-148959600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
24	chr2:148958600-148959600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr2:148958600-148959600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr2:148958600-148959600	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr2:148958600-148959800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:148958600-148960000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
29	chr2:148958800-148959400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
30	chr2:148958800-148959400	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr2:148958800-148959400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
32	chr2:148958800-148959400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
33	chr2:148958800-148959400	Enhancers	Rectal Smooth Muscle	rectum
34	chr2:148958800-148959600	Strong transcription	Primary T cells from cord blood	blood
35	chr2:148958800-148964200	Weak transcription	Adipose Nuclei	Adipose
36	chr2:148959000-148959400	ZNF genes & repeats	Brain Hippocampus Middle	brain
37	chr2:148959000-148959400	ZNF genes & repeats	Fetal Brain Female	brain
38	chr2:148959000-148959600	ZNF genes & repeats	Thymus	Thymus
39	chr2:148959000-148967600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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