Variant report

Variant	rs73009378
Chromosome Location	chr11:108711680-108711681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72993526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73009341	0.95[EUR][1000 genomes]
rs73009381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73009498	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108680600-108724400	Weak transcription	Aorta	Aorta
2	chr11:108687000-108717000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:108701000-108724400	Weak transcription	NHEK	skin
4	chr11:108702800-108712000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr11:108703000-108712000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:108704400-108723000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:108706600-108724400	Weak transcription	Small Intestine	intestine
8	chr11:108706800-108724600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr11:108707000-108712000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:108707200-108714200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:108707200-108724400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:108707400-108712200	Weak transcription	Thymus	Thymus
13	chr11:108707400-108723200	Weak transcription	Psoas Muscle	Psoas
14	chr11:108707600-108740800	Weak transcription	HMEC	breast
15	chr11:108707800-108714000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:108707800-108723200	Weak transcription	Osteobl	bone
17	chr11:108707800-108723400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr11:108707800-108723800	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:108708000-108724000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:108708000-108724400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr11:108708000-108724400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr11:108708000-108724600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:108708200-108712400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr11:108708200-108714000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:108708200-108717000	Weak transcription	NHDF-Ad	bronchial
26	chr11:108708200-108723600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:108708200-108723600	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:108708200-108723800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:108708200-108724400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:108708200-108724400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr11:108708200-108724600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr11:108708200-108729200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:108708400-108717600	Weak transcription	Placenta	Placenta
34	chr11:108708400-108724200	Weak transcription	NH-A	brain
35	chr11:108708400-108724400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr11:108708600-108714600	Weak transcription	HepG2	liver
37	chr11:108708600-108723200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr11:108708600-108724800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr11:108709200-108716200	Weak transcription	Right Ventricle	heart
40	chr11:108709400-108712200	Strong transcription	Dnd41	blood
41	chr11:108709400-108712600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:108709400-108712600	Strong transcription	Primary T cells from cord blood	blood
43	chr11:108709400-108713800	Strong transcription	Primary B cells from cord blood	blood
44	chr11:108709400-108714000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr11:108709600-108712200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:108709600-108723600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr11:108709600-108723800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr11:108709800-108712400	Strong transcription	Primary hematopoietic stem cells	blood
49	chr11:108709800-108716800	Weak transcription	HSMMtube	muscle
50	chr11:108709800-108724800	Weak transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links