Variant report

Variant	rs73009929
Chromosome Location	chr1:153556830-153556831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:153482996..153483594-chr1:153556080..153556918,2	K562	blood:
2	chr1:153554173..153557152-chr1:153580128..153582070,2	MCF-7	breast:
3	chr1:153555980..153560122-chr1:153603661..153606052,3	MCF-7	breast:
4	chr1:153554545..153558198-chr1:153583887..153586960,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000189171	Chromatin interaction
ENSG00000188643	Chromatin interaction
ENSG00000272030	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11486186	1.00[AMR][1000 genomes]
rs11808118	1.00[AMR][1000 genomes]
rs28574283	1.00[AMR][1000 genomes]
rs34192791	1.00[AMR][1000 genomes]
rs61545193	1.00[AMR][1000 genomes]
rs6682725	1.00[AMR][1000 genomes]
rs73009905	1.00[AMR][1000 genomes]
rs73009949	1.00[AMR][1000 genomes]
rs73009950	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73009952	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73026369	1.00[AMR][1000 genomes]
rs73026373	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
2	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv831603	chr1:153405842-153576143	Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	148 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153550600-153560600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:153551000-153559400	Weak transcription	Esophagus	oesophagus
3	chr1:153551400-153559800	Weak transcription	Hela-S3	cervix
4	chr1:153551600-153569600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:153551600-153569600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:153551800-153559000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:153551800-153559800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:153551800-153559800	Weak transcription	NHEK	skin
9	chr1:153552000-153565200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:153552200-153559800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:153556400-153557000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:153556400-153557200	Enhancers	Ovary	ovary
13	chr1:153556400-153557200	Enhancers	Osteobl	bone
14	chr1:153556400-153557400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr1:153556400-153557600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:153556400-153558200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:153556400-153558200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:153556400-153561000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr1:153556600-153557000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:153556600-153557000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:153556600-153557000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr1:153556600-153557000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:153556600-153557000	Enhancers	Brain Anterior Caudate	brain
24	chr1:153556600-153557000	Enhancers	Brain Cingulate Gyrus	brain
25	chr1:153556600-153557000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr1:153556600-153557000	Enhancers	A549	lung
27	chr1:153556600-153557000	Enhancers	HSMMtube	muscle
28	chr1:153556600-153557000	Enhancers	NH-A	brain
29	chr1:153556600-153557000	Enhancers	NHDF-Ad	bronchial
30	chr1:153556600-153557600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:153556600-153557600	Enhancers	Fetal Heart	heart
32	chr1:153556600-153557800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:153556600-153558400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr1:153556800-153557000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:153556800-153570200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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