Variant report

Variant	rs73010054
Chromosome Location	chr3:144493768-144493769
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs57121190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59151842	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6771517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73002283	1.00[AMR][1000 genomes]
rs73006035	1.00[AMR][1000 genomes]
rs73008055	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3357831	chr3:144433846-144790831	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3405013	chr3:144433866-144790801	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv829746	chr3:144451478-144618224	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv829747	chr3:144463330-144654092	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv999196	chr3:144487765-144529406	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv536755	chr3:144487765-144529406	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144491000-144496800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:144491200-144493800	Weak transcription	Fetal Kidney	kidney
3	chr3:144491600-144493800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:144491600-144494000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:144492200-144493800	Weak transcription	Brain Substantia Nigra	brain
6	chr3:144492400-144494400	Weak transcription	HUVEC	blood vessel
7	chr3:144492600-144494400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:144493400-144494600	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:144493400-144494800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:144493400-144495200	Enhancers	NHDF-Ad	bronchial
11	chr3:144493600-144495400	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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