Variant report

Variant	rs73010214
Chromosome Location	chr6:146074059-146074060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs35230590	1.00[AFR][1000 genomes]
rs4896840	1.00[AFR][1000 genomes]
rs72999960	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72999990	1.00[AFR][1000 genomes]
rs73004577	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73006430	1.00[EUR][1000 genomes]
rs73010204	1.00[AFR][1000 genomes]
rs9485028	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034226	chr6:146071068-146306942	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146067400-146076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:146067600-146076600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:146071200-146074200	Weak transcription	HUVEC	blood vessel
4	chr6:146071200-146076400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:146071200-146076400	Weak transcription	HMEC	breast
6	chr6:146071200-146076400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:146071200-146076600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:146071400-146076600	Weak transcription	NHDF-Ad	bronchial
9	chr6:146071400-146076800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:146071400-146076800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:146071400-146077000	Weak transcription	HSMM	muscle
12	chr6:146071600-146076400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:146071600-146076400	Weak transcription	NHEK	skin
14	chr6:146071600-146076800	Weak transcription	NHLF	lung
15	chr6:146071800-146076400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:146073600-146074600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:146073800-146074200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:146073800-146074200	Enhancers	Adipose Nuclei	Adipose
19	chr6:146073800-146074400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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