Variant report

Variant	rs73010313
Chromosome Location	chr1:153193693-153193694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11205226	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060856	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12061164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069265	1.00[AMR][1000 genomes]
rs12074709	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61410792	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010323	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010329	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010331	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010333	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73010336	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012516	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013433	chr1:152619305-153262215	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv535170	chr1:152619305-153262215	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv1001834	chr1:152648853-153279143	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv547899	chr1:152672005-153245082	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
5	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
6	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
7	nsv533877	chr1:152923645-153468131	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
8	nsv1004168	chr1:153088209-153226033	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1013041	chr1:153105260-153223716	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153183200-153205000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:153192800-153193800	Enhancers	Brain Hippocampus Middle	brain
3	chr1:153192800-153196600	Enhancers	Ovary	ovary
4	chr1:153193000-153193800	Enhancers	Brain Substantia Nigra	brain
5	chr1:153193200-153193800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:153193200-153194000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:153193400-153193800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:153193400-153194000	Enhancers	Fetal Intestine Small	intestine
9	chr1:153193400-153194000	Enhancers	Fetal Muscle Trunk	muscle
10	chr1:153193600-153194400	Enhancers	Fetal Intestine Large	intestine
11	chr1:153193600-153195200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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