Variant report

Variant	rs73010425
Chromosome Location	chr3:151178358-151178359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:151176832..151178864-chr3:151180710..151183596,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58583961	1.00[AFR][1000 genomes]
rs73008601	0.82[AFR][1000 genomes]
rs73010404	1.00[AFR][1000 genomes]
rs73010405	1.00[AFR][1000 genomes]
rs73010408	1.00[AFR][1000 genomes]
rs73010422	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829757	chr3:151044880-151226442	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1000355	chr3:151108859-151243835	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv995048	chr3:151114074-151560019	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv877649	chr3:151147968-151236562	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv877650	chr3:151174010-151314449	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:151161600-151178600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:151168800-151178600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:151169000-151178400	Weak transcription	Aorta	Aorta
4	chr3:151174600-151178600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:151176400-151178600	Weak transcription	Lung	lung
6	chr3:151177200-151178400	Active TSS	Adipose Nuclei	Adipose
7	chr3:151177200-151179200	Active TSS	Brain Hippocampus Middle	brain
8	chr3:151177200-151179200	Active TSS	Right Atrium	heart
9	chr3:151177400-151178400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:151177600-151178400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:151177600-151178800	Active TSS	Stomach Smooth Muscle	stomach
12	chr3:151177800-151179200	Active TSS	Ovary	ovary
13	chr3:151177800-151179400	Flanking Active TSS	Dnd41	blood
14	chr3:151178000-151178400	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:151178000-151178400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr3:151178000-151178400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:151178000-151178400	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
18	chr3:151178000-151178600	Active TSS	Fetal Muscle Leg	muscle
19	chr3:151178000-151178600	Bivalent Enhancer	NH-A	brain
20	chr3:151178000-151178800	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr3:151178000-151179200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
22	chr3:151178000-151179200	Active TSS	Rectal Mucosa Donor 31	rectum
23	chr3:151178000-151179200	Active TSS	Rectal Smooth Muscle	rectum
24	chr3:151178000-151179200	Active TSS	Hela-S3	cervix
25	chr3:151178200-151178400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
26	chr3:151178200-151178400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr3:151178200-151178400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
28	chr3:151178200-151178400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
29	chr3:151178200-151178400	Active TSS	Primary hematopoietic stem cells	blood
30	chr3:151178200-151178400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:151178200-151178400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr3:151178200-151178400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr3:151178200-151178400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr3:151178200-151178400	Flanking Active TSS	Colon Smooth Muscle	Colon
35	chr3:151178200-151178400	Bivalent/Poised TSS	Fetal Kidney	kidney
36	chr3:151178200-151178400	Flanking Active TSS	A549	lung
37	chr3:151178200-151178600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
38	chr3:151178200-151178600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
39	chr3:151178200-151178600	Enhancers	Primary T cells from cord blood	blood
40	chr3:151178200-151178600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:151178200-151178600	Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr3:151178200-151178600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr3:151178200-151178800	Active TSS	Duodenum Mucosa	Duodenum
44	chr3:151178200-151179000	Active TSS	Brain Germinal Matrix	brain
45	chr3:151178200-151179000	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr3:151178200-151179200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
47	chr3:151178200-151179200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
48	chr3:151178200-151179200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
49	chr3:151178200-151179200	Active TSS	Fetal Lung	lung
50	chr3:151178200-151179200	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum

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