Variant report

Variant	rs73010609
Chromosome Location	chr11:119768716-119768717
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11217554	0.87[ASN][1000 genomes]
rs11217556	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17245326	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66633375	0.93[ASN][1000 genomes]
rs7128589	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051526	chr11:119750335-119775811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1038232	chr11:119759344-119785065	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1044698	chr11:119767614-119789683	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119763000-119780800	Weak transcription	Right Atrium	heart
2	chr11:119765800-119773800	Weak transcription	Esophagus	oesophagus
3	chr11:119767400-119769000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:119767600-119769200	Enhancers	Stomach Smooth Muscle	stomach
5	chr11:119767800-119768800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:119767800-119770800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:119768000-119768800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:119768000-119768800	Bivalent Enhancer	Fetal Stomach	stomach
9	chr11:119768000-119769600	Enhancers	Fetal Heart	heart
10	chr11:119768000-119778000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:119768200-119768800	Enhancers	Placenta	Placenta
12	chr11:119768400-119768800	Enhancers	Left Ventricle	heart
13	chr11:119768400-119768800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr11:119768400-119772200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:119768600-119768800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr11:119768600-119772200	Weak transcription	Fetal Intestine Small	intestine
17	chr11:119768600-119773200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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