Variant report

Variant	rs73011118
Chromosome Location	chr11:121337225-121337226
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121336740..121338546-chr11:121339651..121341207,2	MCF-7	breast:
2	chr11:121335936..121338346-chr11:121344006..121346639,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73009120	1.00[ASN][1000 genomes]
rs73014851	1.00[AFR][1000 genomes]
rs73018993	1.00[AFR][1000 genomes]
rs73020614	1.00[AFR][1000 genomes]
rs73022646	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121325400-121338000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr11:121331600-121341200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:121331800-121339000	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:121332000-121338800	Enhancers	Brain Angular Gyrus	brain
5	chr11:121332000-121339800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:121332800-121339200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:121333000-121340600	Enhancers	Fetal Thymus	thymus
8	chr11:121333200-121343400	Enhancers	Liver	Liver
9	chr11:121333400-121340800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:121333600-121338200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr11:121333600-121339000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:121333600-121340000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr11:121333800-121339800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:121333800-121340000	Enhancers	Brain Substantia Nigra	brain
15	chr11:121334000-121340000	Enhancers	Brain Cingulate Gyrus	brain
16	chr11:121334200-121339800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:121334200-121340000	Enhancers	Sigmoid Colon	Sigmoid Colon
18	chr11:121334200-121340800	Enhancers	Primary hematopoietic stem cells	blood
19	chr11:121334400-121337600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr11:121334400-121338600	Enhancers	Primary B cells from cord blood	blood
21	chr11:121334400-121338800	Enhancers	Fetal Intestine Large	intestine
22	chr11:121334400-121339000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr11:121334400-121339200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr11:121334600-121338600	Enhancers	Colon Smooth Muscle	Colon
25	chr11:121334600-121338600	Enhancers	HUVEC	blood vessel
26	chr11:121334600-121338800	Enhancers	HepG2	liver
27	chr11:121334600-121339000	Enhancers	NHLF	lung
28	chr11:121334600-121339200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:121334600-121340000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:121334800-121338000	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr11:121335000-121338000	Enhancers	Osteobl	bone
32	chr11:121335000-121338400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:121335000-121339000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:121335200-121337400	Enhancers	Small Intestine	intestine
35	chr11:121335200-121337600	Enhancers	Dnd41	blood
36	chr11:121335200-121338000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:121335200-121338000	Enhancers	NHDF-Ad	bronchial
38	chr11:121335200-121338200	Enhancers	Placenta Amnion	Placenta Amnion
39	chr11:121335200-121339000	Enhancers	Placenta	Placenta
40	chr11:121335200-121339200	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr11:121335200-121339800	Enhancers	Thymus	Thymus
42	chr11:121335400-121339200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr11:121335400-121339200	Enhancers	Fetal Stomach	stomach
44	chr11:121335400-121340200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr11:121335600-121338000	Enhancers	Monocytes-CD14+_RO01746	blood
46	chr11:121335600-121340600	Enhancers	Primary T cells fromperipheralblood	blood
47	chr11:121336000-121337400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr11:121336000-121338200	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr11:121336200-121338600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:121336400-121337800	Flanking Active TSS	GM12878-XiMat	blood

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