Variant report

Variant	rs73011153
Chromosome Location	chr3:150756136-150756137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73011159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73011160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73011174	0.97[AFR][1000 genomes]
rs7618507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7634039	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150753200-150756200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:150754600-150756400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:150754800-150756200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:150755000-150756400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:150755000-150756600	Enhancers	HSMMtube	muscle
6	chr3:150755200-150756200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:150755200-150756400	Enhancers	HUVEC	blood vessel
8	chr3:150755200-150756600	Enhancers	HSMM	muscle
9	chr3:150755400-150756200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:150755400-150756200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:150755400-150756200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:150755400-150756200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:150755400-150756200	Enhancers	Fetal Muscle Leg	muscle
14	chr3:150755400-150756200	Enhancers	NHDF-Ad	bronchial
15	chr3:150755400-150756200	Enhancers	NHEK	skin
16	chr3:150755400-150756400	Enhancers	Ovary	ovary
17	chr3:150755400-150756600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:150755600-150756200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:150755600-150756200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:150755600-150756200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr3:150755600-150756200	Enhancers	Small Intestine	intestine
22	chr3:150755600-150756200	Enhancers	A549	lung
23	chr3:150755800-150756200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:150755800-150756200	Flanking Active TSS	NHLF	lung
25	chr3:150755800-150756200	Flanking Active TSS	Osteobl	bone
26	chr3:150756000-150756200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr3:150756000-150756200	Flanking Active TSS	NH-A	brain
28	chr3:150756000-150756400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr3:150756000-150756600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:150756000-150761000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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