Variant report

Variant	rs73012261
Chromosome Location	chr3:159347984-159347985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73012258	0.85[AFR][1000 genomes]
rs73012263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73874565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159339200-159350200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:159342800-159350000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:159343000-159349200	Weak transcription	NHEK	skin
4	chr3:159343200-159350200	Weak transcription	HMEC	breast
5	chr3:159344600-159348000	Enhancers	A549	lung
6	chr3:159344600-159350400	Weak transcription	HSMMtube	muscle
7	chr3:159346000-159352800	Weak transcription	Fetal Heart	heart
8	chr3:159346200-159350400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:159347000-159348000	Enhancers	NHDF-Ad	bronchial
10	chr3:159347400-159352400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:159347600-159350400	Weak transcription	HSMM	muscle
12	chr3:159347600-159352400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:159347800-159349800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:159347800-159351600	Weak transcription	NHLF	lung
15	chr3:159347800-159352000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:159347800-159352200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:159347800-159352200	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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