Variant report

Variant	rs73014514
Chromosome Location	chr1:165641588-165641589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13374616	1.00[AMR][1000 genomes]
rs57117372	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62622803	1.00[AMR][1000 genomes]
rs73014515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014530	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73028771	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9333442	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv946481	chr1:165639060-165646269	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:165618200-165652400	Strong transcription	Fetal Muscle Leg	muscle
3	chr1:165619000-165642600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:165619000-165643600	Strong transcription	Fetal Muscle Trunk	muscle
5	chr1:165619200-165648800	Strong transcription	Liver	Liver
6	chr1:165619600-165642600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:165619600-165653200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:165623400-165653000	Weak transcription	Stomach Mucosa	stomach
9	chr1:165628000-165646600	Strong transcription	Primary T cells from cord blood	blood
10	chr1:165628800-165642000	Strong transcription	HSMM	muscle
11	chr1:165628800-165642200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:165628800-165644000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:165628800-165646800	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr1:165628800-165646800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:165629000-165653600	Strong transcription	Dnd41	blood
16	chr1:165629200-165641600	Strong transcription	Duodenum Mucosa	Duodenum
17	chr1:165629200-165642800	Strong transcription	Primary hematopoietic stem cells	blood
18	chr1:165629200-165643600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:165629400-165642200	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr1:165629400-165642600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:165629400-165652800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr1:165629400-165654200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr1:165629400-165656000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr1:165629600-165641800	Strong transcription	Fetal Lung	lung
25	chr1:165629600-165643000	Strong transcription	Primary B cells from cord blood	blood
26	chr1:165629600-165654800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr1:165629800-165642000	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr1:165629800-165643600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr1:165629800-165654800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:165630000-165642200	Strong transcription	Fetal Thymus	thymus
31	chr1:165630000-165642200	Strong transcription	Thymus	Thymus
32	chr1:165630000-165654400	Strong transcription	Primary B cells from peripheral blood	blood
33	chr1:165631000-165643400	Strong transcription	Hela-S3	cervix
34	chr1:165632200-165645400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:165632400-165649400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:165633600-165651200	Weak transcription	Pancreas	Pancrea
37	chr1:165633600-165651400	Weak transcription	Gastric	stomach
38	chr1:165633800-165651000	Weak transcription	Small Intestine	intestine
39	chr1:165634400-165644600	Weak transcription	Fetal Brain Male	brain
40	chr1:165634400-165651800	Weak transcription	Fetal Heart	heart
41	chr1:165634600-165644800	Weak transcription	Brain Hippocampus Middle	brain
42	chr1:165635200-165647800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr1:165635800-165645600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr1:165635800-165648600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:165636000-165652400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr1:165636200-165642000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:165636400-165643600	Strong transcription	Fetal Intestine Small	intestine
48	chr1:165636600-165642600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:165637800-165645400	Weak transcription	Right Ventricle	heart
50	chr1:165637800-165645400	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links