Variant report

Variant	rs73014884
Chromosome Location	chr3:150845811-150845812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150839387..150842321-chr3:150844225..150846758,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55905225	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56226762	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57232147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57290375	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57886344	1.00[AMR][1000 genomes]
rs58282727	1.00[AMR][1000 genomes]
rs59070744	1.00[AMR][1000 genomes]
rs59157722	1.00[AMR][1000 genomes]
rs60209219	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60345501	1.00[AMR][1000 genomes]
rs73021139	1.00[AMR][1000 genomes]
rs73021142	1.00[AMR][1000 genomes]
rs73021154	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150819800-150847600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:150826000-150855200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:150826400-150863600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:150826600-150846400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:150826600-150851800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:150826600-150855000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr3:150826800-150846600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:150827200-150847400	Weak transcription	Placenta	Placenta
9	chr3:150827400-150873000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:150827600-150855000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:150827800-150846400	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:150827800-150847400	Weak transcription	Fetal Intestine Large	intestine
13	chr3:150830400-150863000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:150831200-150863000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:150833600-150852000	Weak transcription	Dnd41	blood
16	chr3:150839600-150846000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:150840600-150853200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:150844000-150851800	Weak transcription	Fetal Thymus	thymus
19	chr3:150844200-150846800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:150844200-150847600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr3:150844600-150847600	Weak transcription	Fetal Brain Female	brain
22	chr3:150844600-150853400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr3:150844800-150863600	Weak transcription	Brain Angular Gyrus	brain
24	chr3:150844800-150863600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:150845000-150847200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:150845200-150846400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr3:150845200-150847000	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr3:150845600-150846400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:150845600-150846600	Genic enhancers	Fetal Muscle Leg	muscle
30	chr3:150845600-150848400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:150845600-150851400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr3:150845800-150846000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:150845800-150846400	Strong transcription	Primary hematopoietic stem cells	blood
34	chr3:150845800-150846400	Enhancers	Brain Anterior Caudate	brain
35	chr3:150845800-150846600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr3:150845800-150846600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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