Variant report

Variant	rs73015297
Chromosome Location	chr3:161400199-161400200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11916521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11923911	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11924373	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4487255	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014573	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017205	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017208	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017213	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73017215	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73030538	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161399000-161400200	Weak transcription	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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