Variant report

Variant	rs73015318
Chromosome Location	chr6:163853539-163853540
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:163852299..163854392-chr6:163948916..163951173,3	K562	blood:
2	chr6:163852299..163854392-chr6:163948916..163950508,2	K562	blood:
3	chr6:163843959..163847209-chr6:163851619..163853803,3	K562	blood:
4	chr6:163852487..163854281-chr6:163861213..163863145,2	K562	blood:
5	chr6:163835118..163837117-chr6:163852379..163853988,2	K562	blood:
6	chr6:163852314..163854310-chr6:163857070..163858780,2	K562	blood:
7	chr6:163846800..163851219-chr6:163853000..163856016,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11962088	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11964436	0.84[EUR][1000 genomes]
rs16894934	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16895015	0.90[ASN][1000 genomes]
rs17591955	0.86[ASN][1000 genomes]
rs2064230	0.80[ASN][1000 genomes]
rs2065857	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2294707	0.87[ASN][1000 genomes]
rs3763197	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3857504	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3904720	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4709716	0.84[ASN][1000 genomes]
rs55779730	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56062115	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6931903	0.87[ASN][1000 genomes]
rs6939218	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73013582	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73013591	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73015309	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73015387	0.91[ASN][1000 genomes]
rs7758706	0.96[ASN][1000 genomes]
rs7772756	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1797109	chr6:163834147-163908115	Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163837400-163857200	Weak transcription	Spleen	Spleen
2	chr6:163838000-163860600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:163840800-163865000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:163840800-163881400	Weak transcription	Fetal Stomach	stomach
5	chr6:163841600-163858600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:163841600-163864400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:163842600-163865200	Weak transcription	Fetal Kidney	kidney
8	chr6:163843800-163856200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:163843800-163862600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:163844200-163853600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:163844200-163860400	Weak transcription	Lung	lung
12	chr6:163845400-163877800	Weak transcription	Fetal Muscle Leg	muscle
13	chr6:163846000-163861600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:163846400-163860000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:163847800-163862400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:163847800-163862600	Weak transcription	Aorta	Aorta
17	chr6:163848600-163855400	Enhancers	HUVEC	blood vessel
18	chr6:163848800-163878400	Weak transcription	Pancreas	Pancrea
19	chr6:163849200-163859000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr6:163850000-163858000	Weak transcription	HepG2	liver
21	chr6:163850200-163857400	Weak transcription	NH-A	brain
22	chr6:163851000-163858600	Weak transcription	HSMM	muscle
23	chr6:163851600-163855000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:163851800-163855600	Enhancers	Fetal Heart	heart
25	chr6:163851800-163857600	Weak transcription	Ovary	ovary
26	chr6:163852000-163855000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:163852000-163855000	Enhancers	Brain Substantia Nigra	brain
28	chr6:163852000-163855600	Enhancers	Brain Angular Gyrus	brain
29	chr6:163852000-163856200	Weak transcription	Right Atrium	heart
30	chr6:163852000-163856200	Weak transcription	Right Ventricle	heart
31	chr6:163852000-163856200	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:163852000-163856400	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr6:163852000-163857800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr6:163852000-163858000	Weak transcription	Fetal Lung	lung
35	chr6:163852000-163858800	Weak transcription	HSMMtube	muscle
36	chr6:163852000-163859400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:163852000-163859400	Weak transcription	NHEK	skin
38	chr6:163852000-163880000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr6:163852200-163854400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:163852200-163855000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:163852200-163855200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr6:163852200-163856400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr6:163852200-163858000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr6:163852200-163858600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:163852200-163858600	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr6:163852200-163865200	Weak transcription	A549	lung
47	chr6:163852200-163875600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:163852200-163875600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:163852400-163857200	Enhancers	Brain Anterior Caudate	brain
50	chr6:163852400-163857800	Weak transcription	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links